Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.82906 * 2 1 4 4 C 1.54572 * 110.76621 * 236.63151 * 2 1 3 5 5 C 1.51667 * 102.84484 * 267.45319 * 4 2 1 6 6 C 1.38387 * 131.29229 * 163.70038 * 5 4 2 7 7 C 1.37649 * 120.40690 * 180.29520 * 6 5 4 8 8 C 1.40773 * 119.63987 * 0.09193 * 7 6 5 9 9 C 1.41406 * 120.13328 * 179.72801 * 8 7 6 10 10 H 1.08005 * 119.99605 * 204.56401 * 9 8 7 11 11 C 1.39932 * 120.00313 * 24.56522 * 9 8 7 12 12 N 1.30823 * 119.99765 * 17.92025 * 11 9 8 13 13 Si 1.86795 * 119.99980 * 197.92443 * 11 9 8 14 14 H 1.48506 * 109.47111 * 89.99719 * 13 11 9 15 15 H 1.48507 * 109.47188 * 209.99674 * 13 11 9 16 16 H 1.48500 * 109.47449 * 329.99767 * 13 11 9 17 17 C 1.40378 * 119.73148 * 359.75036 * 8 7 6 18 18 C 1.38803 * 119.99696 * 0.07500 * 17 8 7 19 19 N 1.40096 * 129.74800 * 180.25038 * 18 17 8 20 20 C 1.46901 * 110.99923 * 76.35897 * 19 18 17 21 21 H 1.08999 * 109.47337 * 298.10404 * 1 2 3 22 22 H 1.09004 * 109.46496 * 58.09438 * 1 2 3 23 23 H 1.08997 * 109.47290 * 178.08886 * 1 2 3 24 24 H 1.08992 * 110.74216 * 25.79230 * 4 2 1 25 25 H 1.08999 * 110.73789 * 148.94096 * 4 2 1 26 26 H 1.08007 * 119.79702 * 0.33151 * 6 5 4 27 27 H 1.08007 * 120.17817 * 180.02562 * 7 6 5 28 28 H 0.96997 * 120.00157 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.00311 * 180.02562 * 17 8 7 30 30 H 1.08998 * 109.46763 * 180.02562 * 20 19 18 31 31 H 1.08996 * 109.47037 * 60.02425 * 20 19 18 32 32 H 1.08998 * 109.47280 * 300.01932 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0780 -0.7949 -1.2070 5 6 2.2590 -2.1893 -0.6384 6 6 2.4312 -3.4137 -1.2598 7 6 2.5706 -4.5610 -0.5121 8 6 2.5355 -4.4847 0.8931 9 6 2.6719 -5.6575 1.6713 10 1 2.2662 -5.6919 2.6717 11 6 3.3326 -6.7733 1.1454 12 7 4.1173 -6.6396 0.1073 13 14 3.0939 -8.4536 1.9257 14 1 1.9456 -9.1401 1.2812 15 1 4.3237 -9.2651 1.7395 16 1 2.8228 -8.2917 3.3767 17 6 2.3640 -3.2398 1.5187 18 6 2.2283 -2.0907 0.7520 19 7 2.0542 -0.7603 1.1550 20 6 3.3185 -0.1855 1.6336 21 1 -0.3634 0.4841 0.9065 22 1 -0.3632 0.5432 -0.8725 23 1 -0.3634 -1.0271 -0.0343 24 1 1.3568 -0.8020 -2.0242 25 1 3.0314 -0.3839 -1.5391 26 1 2.4569 -3.4694 -2.3381 27 1 2.7052 -5.5146 -1.0009 28 1 4.5750 -7.4131 -0.2575 29 1 2.3368 -3.1762 2.5965 30 1 3.1548 0.8475 1.9405 31 1 4.0569 -0.2138 0.8323 32 1 3.6820 -0.7636 2.4832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 8.224742 kcal Electronic energy + Delta-G solvation = -14374.841263 eV Core-core repulsion = 12106.019195 eV Total energy + Delta-G solvation = -2268.822068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30487 -37.88798 -35.10469 -33.32312 -31.54447 -30.30113 -28.60103 -26.39453 -25.71599 -22.55826 -21.84793 -21.19891 -18.89414 -17.10154 -16.88392 -16.31805 -15.97427 -15.54973 -14.86887 -14.48489 -14.27709 -14.06073 -13.67430 -13.44857 -13.21253 -12.88918 -12.75835 -12.60097 -12.36497 -12.24674 -11.91500 -11.86199 -11.63209 -11.24433 -11.01900 -10.00013 -9.34260 -8.66560 -8.55170 -6.35670 0.92332 1.03314 1.37585 1.50698 1.51191 2.20324 2.66798 2.95786 3.65568 3.89468 4.07776 4.21746 4.41685 4.45225 4.59694 4.61105 4.81684 4.88675 4.93607 4.98058 5.00971 5.06293 5.14810 5.24824 5.31052 5.43210 5.52381 5.88020 5.94426 6.02648 6.17440 6.36376 6.46761 6.72032 6.92804 7.03592 8.32189 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050704 B = 0.007780 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.091445 B = 3597.937621 C = 3775.946844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.074 3.926 3 H 0.111 0.889 4 C -0.080 4.080 5 C -0.265 4.265 6 C -0.081 4.081 7 C -0.197 4.197 8 C 0.094 3.906 9 C -0.500 4.500 10 H 0.073 0.927 11 C 0.037 3.963 12 N -0.824 5.824 13 Si 0.984 3.016 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.259 1.259 17 C -0.234 4.234 18 C 0.105 3.895 19 N -0.506 5.506 20 C 0.033 3.967 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.029 0.971 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.289 0.711 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.022 0.978 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 8.261 -1.277 8.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.033 4.033 3 H 0.129 0.871 4 C -0.118 4.118 5 C -0.268 4.268 6 C -0.100 4.100 7 C -0.216 4.216 8 C 0.092 3.908 9 C -0.530 4.530 10 H 0.091 0.909 11 C -0.178 4.178 12 N -0.450 5.450 13 Si 0.804 3.196 14 H -0.186 1.186 15 H -0.190 1.190 16 H -0.183 1.183 17 C -0.255 4.255 18 C 0.010 3.990 19 N -0.224 5.224 20 C -0.113 4.113 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.048 0.952 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.709 8.238 -0.972 8.726 hybrid contribution 0.719 -1.157 -0.267 1.388 sum -1.990 7.080 -1.239 7.458 Atomic orbital electron populations 1.21643 0.93000 1.01051 1.02734 1.22760 0.96856 0.97122 0.86567 0.87125 1.21448 1.00813 0.90981 0.98598 1.20762 1.16253 0.95437 0.94362 1.20235 0.99685 0.91826 0.98265 1.21201 1.09120 0.97297 0.94016 1.17680 0.88340 0.92052 0.92774 1.19787 1.33838 0.97694 1.01665 0.90882 1.26754 0.91681 1.04549 0.94842 1.69879 1.19958 1.33668 1.21498 0.85183 0.78973 0.75882 0.79531 1.18577 1.19003 1.18308 1.20439 1.16839 0.91046 0.97203 1.19307 0.97365 0.89561 0.92809 1.60293 1.27468 0.99865 1.34805 1.22404 0.88885 1.00771 0.99204 0.91609 0.89640 0.95164 0.89984 0.91490 0.87565 0.87677 0.90051 0.89590 0.88256 0.95887 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.49 71.98 0.68 -2.78 16 2 C 0.07 2.23 3.31 45.26 0.15 2.38 16 3 H 0.11 2.61 7.76 -2.39 -0.02 2.59 16 4 C -0.08 -2.71 6.51 30.69 0.20 -2.51 16 5 C -0.26 -11.91 6.24 -19.24 -0.12 -12.03 16 6 C -0.08 -3.95 10.00 22.17 0.22 -3.73 16 7 C -0.20 -10.79 8.70 22.75 0.20 -10.59 16 8 C 0.09 5.36 5.57 -21.36 -0.12 5.24 16 9 C -0.50 -28.11 9.04 23.46 0.21 -27.90 16 10 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 11 C 0.04 1.90 5.14 85.25 0.44 2.34 16 12 N -0.82 -44.02 10.96 21.82 0.24 -43.78 16 13 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 14 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 15 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 C -0.23 -12.43 9.81 22.93 0.22 -12.21 16 18 C 0.10 4.90 5.52 38.24 0.21 5.11 16 19 N -0.51 -19.07 5.00 -689.89 -3.45 -22.52 16 20 C 0.03 1.07 9.29 127.69 1.19 2.26 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 2.47 7.92 -2.39 -0.02 2.45 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 27 H 0.11 5.97 6.16 -2.91 -0.02 5.95 16 28 H 0.29 13.85 8.30 -92.71 -0.77 13.09 16 29 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.10 2.40 8.10 -2.39 -0.02 2.38 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.38 266.61 3.39 -58.99 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.09 Total: 20.67 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 3.49 Total: -54.43 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -3.21 Total: -66.31 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -62.38 3.39 -58.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.216 kcal (2) G-P(sol) polarization free energy of solvation -62.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds