Wall clock time and date at job start Mon Mar 30 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 C 1.38256 * 120.45324 * 60.00303 * 12 2 1 14 14 N 1.31858 * 120.71255 * 180.02562 * 13 12 2 15 15 C 1.31858 * 121.78529 * 0.02562 * 14 13 12 16 16 C 1.38297 * 120.75956 * 359.96872 * 15 14 13 17 17 C 1.38515 * 119.04306 * 359.78387 * 16 15 14 18 18 C 1.51056 * 109.86822 * 179.80528 * 17 16 15 19 19 C 1.54409 * 105.21138 * 343.31724 * 18 17 16 20 20 C 1.51183 * 131.27763 * 180.02562 * 16 15 14 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.64322 * 0.02959 * 13 12 2 26 26 H 1.08002 * 119.62197 * 179.97438 * 15 14 13 27 27 H 1.08996 * 110.44832 * 224.29296 * 18 17 16 28 28 H 1.09002 * 110.19381 * 102.21251 * 18 17 16 29 29 H 1.09000 * 110.81150 * 267.69907 * 19 18 17 30 30 H 1.09005 * 110.97548 * 144.26225 * 19 18 17 31 31 H 1.08997 * 110.29712 * 316.02066 * 20 16 15 32 32 H 1.09009 * 110.29521 * 78.14809 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 6 1.7041 -2.0338 1.4587 14 7 2.1404 -2.6601 2.5339 15 6 2.8996 -2.0581 3.4282 16 6 3.2688 -0.7351 3.2671 17 6 2.8331 -0.0470 2.1467 18 6 3.3495 1.3720 2.1827 19 6 3.7909 1.6057 3.6438 20 6 4.1162 0.1756 4.1263 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 1.0838 -2.5604 0.7486 26 1 3.2372 -2.6045 4.2965 27 1 2.5597 2.0718 1.9096 28 1 4.1995 1.4803 1.5088 29 1 2.9788 2.0366 4.2294 30 1 4.6764 2.2399 3.6873 31 1 3.8490 0.0609 5.1767 32 1 5.1742 -0.0418 3.9786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:16 Heat of formation + Delta-G solvation = 12.837647 kcal Electronic energy + Delta-G solvation = -14382.292376 eV Core-core repulsion = 12113.670338 eV Total energy + Delta-G solvation = -2268.622037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15731 -36.15262 -34.76377 -31.80323 -29.28361 -28.92162 -27.00225 -25.17246 -23.08058 -21.50958 -20.82143 -19.16924 -16.59873 -15.96870 -15.57457 -15.09534 -14.74944 -13.53827 -13.10124 -13.05740 -12.66349 -12.56140 -12.36651 -11.71024 -11.39327 -11.20732 -10.97950 -10.91346 -10.88153 -10.85053 -10.36337 -10.20130 -9.69878 -9.16471 -8.74688 -8.47273 -8.35948 -7.93530 -6.05476 -4.12702 1.82238 2.01620 3.29683 3.34021 3.37686 4.36704 4.51423 4.75791 4.86575 5.14217 5.19214 5.25795 5.51056 5.54148 5.74111 5.86606 5.97114 6.00597 6.17801 6.23882 6.36187 6.43381 6.56805 6.75239 6.86045 6.90836 7.12052 7.19339 7.49523 7.65135 7.87104 8.03277 8.32848 8.67712 8.89410 9.52305 11.00056 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.008932 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.054802 B = 3133.929119 C = 3392.803559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 C -0.066 4.066 13 C 0.097 3.903 14 N -0.490 5.490 15 C 0.076 3.924 16 C -0.160 4.160 17 C -0.068 4.068 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.071 4.071 21 H 0.007 0.993 22 H 0.087 0.913 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.156 0.844 26 H 0.139 0.861 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 0.880 9.962 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.201 1.201 12 C -0.067 4.067 13 C -0.060 4.060 14 N -0.198 5.198 15 C -0.081 4.081 16 C -0.162 4.162 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.158 4.158 20 C -0.109 4.109 21 H 0.027 0.973 22 H 0.106 0.894 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.173 0.827 26 H 0.157 0.843 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.683 0.116 9.948 10.609 hybrid contribution 0.566 0.346 -1.084 1.270 sum 4.249 0.462 8.865 9.841 Atomic orbital electron populations 1.21802 0.97495 0.99431 1.00340 1.17814 0.92864 0.95562 0.88056 0.94428 1.21045 1.31484 1.12473 0.89827 0.92586 1.24941 0.94937 0.94958 0.98915 1.69870 1.36441 1.22791 1.23621 0.86633 0.79235 0.79871 0.82174 1.21219 1.20288 1.20133 1.21229 0.94024 0.94886 0.96594 1.22608 0.97802 0.91888 0.93656 1.67638 1.10577 1.38511 1.03095 1.21886 0.96851 0.91095 0.98237 1.21442 1.00919 0.95854 0.98009 1.20690 0.96419 0.96443 0.94040 1.20941 1.01060 0.93108 0.96523 1.22323 1.01160 0.96192 0.96094 1.20889 0.98618 0.93111 0.98288 0.97347 0.89404 0.95154 0.92815 0.82698 0.84321 0.90324 0.90023 0.91270 0.90840 0.91197 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.79 37.16 0.33 -2.84 16 2 C 0.08 1.87 2.49 -92.93 -0.23 1.64 16 3 H 0.04 0.98 7.11 -51.92 -0.37 0.61 16 4 C -0.51 -13.73 8.26 -34.44 -0.28 -14.01 16 5 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C -0.07 -1.45 4.74 -104.49 -0.50 -1.94 16 13 C 0.10 2.08 9.91 -17.53 -0.17 1.91 16 14 N -0.49 -9.90 10.36 -13.22 -0.14 -10.04 16 15 C 0.08 1.34 11.19 -17.52 -0.20 1.15 16 16 C -0.16 -2.75 6.18 -104.26 -0.64 -3.39 16 17 C -0.07 -1.33 6.05 -104.22 -0.63 -1.96 16 18 C -0.08 -1.30 6.05 -26.97 -0.16 -1.46 16 19 C -0.12 -1.51 7.08 -25.26 -0.18 -1.69 16 20 C -0.07 -0.93 6.76 -26.92 -0.18 -1.11 16 21 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 22 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 23 H 0.03 0.69 7.42 -51.93 -0.39 0.30 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.16 3.30 7.60 -52.49 -0.40 2.90 16 26 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.08 1.31 7.88 -51.93 -0.41 0.90 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -28.57 264.25 -7.87 -36.43 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.37 Total: -0.26 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.95 Total: -22.07 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.49 Total: -34.14 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.57 -7.87 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.272 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds