Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47267 * 2 1 4 4 C 1.50705 * 109.47283 * 120.00248 * 2 1 3 5 5 H 1.08002 * 119.99624 * 119.99821 * 4 2 1 6 6 C 1.37868 * 119.99754 * 299.99971 * 4 2 1 7 7 N 1.31515 * 119.99935 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00134 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46994 * 90.00296 * 8 6 4 10 10 H 1.48500 * 109.47000 * 209.99911 * 8 6 4 11 11 H 1.48490 * 109.47247 * 329.99823 * 8 6 4 12 12 C 1.50703 * 109.46957 * 240.00092 * 2 1 3 13 13 C 1.38257 * 120.45616 * 299.97724 * 12 2 1 14 14 N 1.31847 * 120.71132 * 180.02562 * 13 12 2 15 15 C 1.31865 * 121.78658 * 0.02562 * 14 13 12 16 16 C 1.38288 * 120.76154 * 359.97438 * 15 14 13 17 17 C 1.38516 * 119.04161 * 359.97438 * 16 15 14 18 18 C 1.51047 * 109.87360 * 179.78204 * 17 16 15 19 19 C 1.54256 * 105.22817 * 343.29252 * 18 17 16 20 20 C 1.51178 * 131.28154 * 180.02562 * 16 15 14 21 21 H 1.09001 * 109.47342 * 299.99918 * 1 2 3 22 22 H 1.08999 * 109.47224 * 59.99775 * 1 2 3 23 23 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 24 24 H 0.97006 * 120.00013 * 179.97438 * 7 6 4 25 25 H 1.08001 * 119.64113 * 0.02683 * 13 12 2 26 26 H 1.08002 * 119.62162 * 180.02562 * 15 14 13 27 27 H 1.08995 * 110.30799 * 102.14160 * 18 17 16 28 28 H 1.09003 * 110.31079 * 224.30440 * 18 17 16 29 29 H 1.08996 * 110.61586 * 267.64703 * 19 18 17 30 30 H 1.09006 * 111.10692 * 144.25530 * 19 18 17 31 31 H 1.08999 * 110.29522 * 315.97586 * 20 16 15 32 32 H 1.08998 * 110.30262 * 78.11095 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 2.1372 -0.8597 3.5564 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1773 1.4924 12 6 2.0322 -0.7104 -1.2305 13 6 1.7044 -2.0341 -1.4584 14 7 2.1415 -2.6606 -2.5330 15 6 2.9020 -2.0591 -3.4266 16 6 3.2709 -0.7360 -3.2659 17 6 2.8291 -0.0458 -2.1491 18 6 3.3546 1.3700 -2.1794 19 6 4.5067 1.3527 -3.2051 20 6 4.1187 0.1745 -4.1247 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.9032 -0.5281 4.4375 25 1 1.0835 -2.5604 -0.7486 26 1 3.2402 -2.6058 -4.2945 27 1 2.5727 2.0569 -2.5030 28 1 3.7275 1.6563 -1.1960 29 1 5.4585 1.1606 -2.7100 30 1 4.5458 2.2858 -3.7673 31 1 5.0118 -0.3499 -4.4644 32 1 3.5430 0.5340 -4.9776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = 21.462088 kcal Electronic energy + Delta-G solvation = -14441.723538 eV Core-core repulsion = 12173.475485 eV Total energy + Delta-G solvation = -2268.248054 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27113 -36.25276 -34.98107 -31.94819 -29.58525 -29.35100 -27.18562 -25.12784 -23.28415 -21.59266 -20.94024 -19.18923 -16.94416 -15.98210 -15.77901 -15.17425 -14.96609 -13.62768 -13.27664 -13.11064 -12.85661 -12.75098 -12.54933 -12.24179 -11.81671 -11.49774 -11.17722 -11.00330 -10.94947 -10.93374 -10.27622 -10.19978 -9.49274 -9.32135 -8.78792 -8.63224 -8.55968 -8.05378 -6.12752 -4.13463 1.73625 1.90605 3.22931 3.32719 3.35512 4.34549 4.38304 4.68706 4.77415 5.07039 5.13167 5.19410 5.41472 5.45820 5.62260 5.80675 5.85650 5.91524 5.96566 6.13486 6.21526 6.29290 6.32927 6.35784 6.60381 6.60916 6.67831 6.90691 6.93942 7.37751 7.42235 7.65854 8.43387 8.60366 8.90673 9.47580 10.99950 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034582 B = 0.009780 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.465947 B = 2862.443968 C = 3214.867374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.267 1.267 12 C -0.062 4.062 13 C 0.104 3.896 14 N -0.488 5.488 15 C 0.081 3.919 16 C -0.159 4.159 17 C -0.067 4.067 18 C -0.083 4.083 19 C -0.120 4.120 20 C -0.071 4.071 21 H 0.043 0.957 22 H 0.029 0.971 23 H 0.055 0.945 24 H 0.265 0.735 25 H 0.159 0.841 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 4.539 -12.913 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.192 1.192 12 C -0.064 4.064 13 C -0.053 4.053 14 N -0.196 5.196 15 C -0.075 4.075 16 C -0.162 4.162 17 C -0.074 4.074 18 C -0.120 4.120 19 C -0.157 4.157 20 C -0.109 4.109 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.176 0.824 26 H 0.159 0.841 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.237 3.645 -12.840 13.405 hybrid contribution -0.375 1.566 0.494 1.685 sum 0.862 5.212 -12.347 13.429 Atomic orbital electron populations 1.22168 0.98225 1.01090 0.98700 1.18260 0.91955 0.96246 0.91188 0.94470 1.20920 1.32366 1.13652 0.87969 0.90617 1.24985 0.95633 0.96605 0.95741 1.69890 1.45336 1.40216 0.97959 0.86845 0.80663 0.83744 0.76933 1.20494 1.22455 1.19171 1.20770 0.95082 0.94899 0.95609 1.22635 0.97505 0.91634 0.93536 1.67669 1.10470 1.38376 1.03091 1.21942 0.96431 0.91050 0.98123 1.21437 1.01234 0.95728 0.97754 1.20668 0.96488 0.96248 0.94034 1.20951 0.97375 0.93123 1.00510 1.22293 0.98622 0.97997 0.96831 1.20894 0.98205 0.94602 0.97213 0.93862 0.95155 0.92570 0.92518 0.82425 0.84129 0.90408 0.89884 0.91020 0.90806 0.91016 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.49 37.15 0.32 -2.77 16 2 C 0.04 0.99 2.08 -92.92 -0.19 0.80 16 3 H 0.04 0.87 6.17 -51.93 -0.32 0.55 16 4 C -0.51 -14.03 8.84 -34.44 -0.30 -14.33 16 5 H 0.08 2.29 7.85 -52.49 -0.41 1.88 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 12 C -0.06 -1.31 4.74 -104.49 -0.50 -1.80 16 13 C 0.10 2.16 9.91 -17.54 -0.17 1.99 16 14 N -0.49 -9.61 10.36 -13.22 -0.14 -9.75 16 15 C 0.08 1.38 11.19 -17.52 -0.20 1.19 16 16 C -0.16 -2.62 6.18 -104.27 -0.64 -3.27 16 17 C -0.07 -1.23 6.05 -104.22 -0.63 -1.86 16 18 C -0.08 -1.27 6.04 -27.06 -0.16 -1.43 16 19 C -0.12 -1.45 7.07 -25.33 -0.18 -1.63 16 20 C -0.07 -0.88 6.77 -26.91 -0.18 -1.06 16 21 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.15 7.42 -51.93 -0.39 0.77 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.16 3.28 7.60 -52.49 -0.40 2.88 16 26 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 257.43 15.07 3.88 3.88 Total: -1.00 -30.21 257.43 -6.81 -37.02 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.24 Total: 0.00 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.95 Total: -22.24 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.64 Total: -35.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.21 -6.81 -37.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.480 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds