Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.65977 * 2 1 4 4 C 1.54599 * 110.74427 * 123.39857 * 2 1 3 5 5 N 1.47910 * 102.63560 * 143.89599 * 4 2 1 6 6 C 1.40035 * 107.88522 * 332.74354 * 5 4 2 7 7 C 1.39007 * 110.96102 * 18.31844 * 6 5 4 8 8 C 1.37878 * 120.48434 * 179.51778 * 7 6 5 9 9 C 1.38341 * 120.07910 * 0.14418 * 8 7 6 10 10 C 1.38265 * 119.88785 * 0.07446 * 9 8 7 11 11 C 1.37950 * 120.26221 * 359.87030 * 10 9 8 12 12 C 1.50701 * 119.90473 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47296 * 265.00739 * 12 11 10 14 14 H 1.08002 * 120.00072 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00072 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99997 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46928 * 89.99911 * 17 15 13 19 19 H 1.48499 * 109.47050 * 209.99808 * 17 15 13 20 20 H 1.48495 * 109.47042 * 329.99806 * 17 15 13 21 21 H 1.09004 * 109.47177 * 183.19592 * 1 2 3 22 22 H 1.09002 * 109.46770 * 303.19015 * 1 2 3 23 23 H 1.09003 * 109.47578 * 63.18982 * 1 2 3 24 24 H 1.09001 * 110.77512 * 262.18191 * 4 2 1 25 25 H 1.09005 * 110.77748 * 25.42162 * 4 2 1 26 26 H 1.00891 * 110.99732 * 94.56600 * 5 4 2 27 27 H 1.07995 * 119.95699 * 180.12389 * 8 7 6 28 28 H 1.08001 * 120.05783 * 180.02562 * 9 8 7 29 29 H 1.07998 * 119.87303 * 179.59642 * 10 9 8 30 30 H 1.09002 * 109.46784 * 25.00365 * 12 11 10 31 31 H 1.09001 * 109.47262 * 145.00026 * 12 11 10 32 32 H 0.97007 * 120.00359 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0776 -0.7958 1.2070 5 7 3.2827 -1.4450 0.6467 6 6 3.0831 -1.6072 -0.7299 7 6 2.0667 -0.7760 -1.1863 8 6 1.7134 -0.7700 -2.5190 9 6 2.3689 -1.5968 -3.4138 10 6 3.3782 -2.4307 -2.9691 11 6 3.7363 -2.4396 -1.6369 12 6 4.8371 -3.3521 -1.1609 13 6 4.2378 -4.6321 -0.6381 14 1 3.1668 -4.7708 -0.6490 15 6 5.0568 -5.6261 -0.1459 16 7 6.3609 -5.4574 -0.1331 17 14 4.3138 -7.2125 0.5029 18 1 4.2023 -8.1959 -0.6043 19 1 5.1843 -7.7662 1.5710 20 1 2.9643 -6.9365 1.0576 21 1 -0.3634 -1.0261 0.0573 22 1 -0.3633 0.5626 0.8600 23 1 -0.3634 0.4635 -0.9172 24 1 2.3441 -0.1249 2.0237 25 1 1.3537 -1.5396 1.5403 26 1 4.1081 -0.8947 0.8300 27 1 0.9239 -0.1194 -2.8648 28 1 2.0922 -1.5916 -4.4577 29 1 3.8853 -3.0808 -3.6667 30 1 5.5069 -3.5770 -1.9910 31 1 5.3972 -2.8613 -0.3649 32 1 6.9372 -6.1568 0.2129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = 20.627103 kcal Electronic energy + Delta-G solvation = -14259.136084 eV Core-core repulsion = 11990.851822 eV Total energy + Delta-G solvation = -2268.284261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07524 -36.12470 -33.56345 -32.30010 -30.35611 -28.67109 -26.68790 -25.20392 -23.22922 -21.67457 -20.73091 -19.19137 -16.62846 -16.18279 -15.08044 -14.91742 -14.65425 -14.30239 -14.05551 -12.85190 -12.64506 -12.56539 -12.28525 -11.99065 -11.55964 -11.40800 -11.22850 -11.02079 -10.85808 -10.73518 -10.39865 -10.22119 -9.51265 -9.33636 -9.00507 -8.30700 -7.86574 -7.16869 -5.92589 -3.93473 1.97264 2.13508 3.37291 3.42905 3.48656 4.36170 4.38842 4.57599 4.80547 5.07772 5.17294 5.42451 5.46316 5.56399 5.60607 5.73684 5.84760 5.90974 6.06481 6.16852 6.30854 6.34093 6.42807 6.74889 6.93497 7.09429 7.20845 7.36323 7.61567 7.67124 7.92205 7.96372 8.03331 8.45934 9.09503 9.68207 11.17729 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.008828 C = 0.007896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.780942 B = 3170.982287 C = 3545.231336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.078 0.922 4 C 0.058 3.942 5 N -0.618 5.618 6 C 0.094 3.906 7 C -0.151 4.151 8 C -0.114 4.114 9 C -0.139 4.139 10 C -0.111 4.111 11 C -0.033 4.033 12 C 0.056 3.944 13 C -0.492 4.492 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.348 0.652 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 10.901 -1.067 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.070 4.070 5 N -0.245 5.245 6 C -0.003 4.003 7 C -0.154 4.154 8 C -0.133 4.133 9 C -0.158 4.158 10 C -0.129 4.129 11 C -0.035 4.035 12 C 0.019 3.981 13 C -0.531 4.531 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.173 0.827 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.576 10.156 -0.731 13.312 hybrid contribution -0.312 -0.127 0.067 0.343 sum -8.887 10.029 -0.664 13.416 Atomic orbital electron populations 1.21659 0.94063 1.02122 1.01282 1.21277 0.96532 0.98638 0.93622 0.90405 1.23059 0.92367 0.96078 0.95545 1.58198 1.05199 1.50707 1.10388 1.19274 0.96981 0.95737 0.88313 1.20848 1.01299 0.99036 0.94247 1.20057 1.00679 1.00780 0.91734 1.20908 0.97850 0.98383 0.98671 1.20893 0.97784 0.98940 0.95317 1.20191 0.98286 0.93664 0.91358 1.18228 0.90785 0.92509 0.96544 1.20961 0.93028 0.99210 1.39889 0.92796 1.24963 0.94814 0.98544 0.96079 1.69956 1.02777 1.33872 1.47258 0.86568 0.79143 0.83580 0.78585 1.20807 1.21291 1.19906 0.92290 0.92699 0.92715 0.90635 0.89847 0.82733 0.87556 0.86846 0.86079 0.95846 0.95204 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.13 37.16 0.34 -1.24 16 2 C -0.08 -1.14 3.67 -90.50 -0.33 -1.47 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.06 0.86 7.34 -2.43 -0.02 0.84 16 5 N -0.62 -11.69 7.09 -56.56 -0.40 -12.09 16 6 C 0.09 1.93 6.49 -83.40 -0.54 1.39 16 7 C -0.15 -2.65 5.66 -104.04 -0.59 -3.24 16 8 C -0.11 -1.88 9.88 -39.68 -0.39 -2.27 16 9 C -0.14 -2.38 10.06 -39.53 -0.40 -2.77 16 10 C -0.11 -2.21 9.65 -39.68 -0.38 -2.60 16 11 C -0.03 -0.75 5.09 -104.31 -0.53 -1.28 16 12 C 0.06 1.49 5.04 -29.04 -0.15 1.34 16 13 C -0.49 -14.29 9.09 -34.44 -0.31 -14.60 16 14 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 17 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 26 H 0.35 5.97 8.85 -39.30 -0.35 5.62 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.02 0.64 8.05 -51.93 -0.42 0.23 16 31 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -31.43 271.53 -8.51 -39.94 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.51 Total: 1.54 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.40 Total: -24.35 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.34 Total: -38.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.43 -8.51 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.570 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds