Wall clock time and date at job start Mon Mar 30 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.79132 * 2 1 4 4 C 1.54572 * 110.73108 * 236.73160 * 2 1 3 5 5 N 1.47886 * 102.68876 * 215.98145 * 4 2 1 6 6 C 1.46895 * 111.00268 * 149.28660 * 5 4 2 7 7 C 1.40092 * 107.87899 * 27.46359 * 5 4 2 8 8 C 1.38805 * 129.75368 * 161.60687 * 7 5 4 9 9 C 1.40379 * 119.99781 * 179.60776 * 8 7 5 10 10 C 1.41403 * 120.13818 * 179.91427 * 9 8 7 11 11 H 1.07997 * 119.99630 * 334.54635 * 10 9 8 12 12 C 1.39929 * 120.00072 * 154.55056 * 10 9 8 13 13 N 1.30829 * 119.99967 * 343.05186 * 12 10 9 14 14 Si 1.86798 * 119.99967 * 163.05855 * 12 10 9 15 15 H 1.48503 * 109.47207 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47415 * 119.99773 * 14 12 10 17 17 H 1.48495 * 109.47386 * 239.99838 * 14 12 10 18 18 C 1.40782 * 119.72840 * 359.93014 * 9 8 7 19 19 C 1.37653 * 119.64408 * 0.22635 * 18 9 8 20 20 C 1.38394 * 120.40028 * 359.92994 * 19 18 9 21 21 H 1.09001 * 109.46889 * 298.17477 * 1 2 3 22 22 H 1.09004 * 109.47425 * 58.16637 * 1 2 3 23 23 H 1.08996 * 109.47213 * 178.17462 * 1 2 3 24 24 H 1.08996 * 110.77046 * 97.67704 * 4 2 1 25 25 H 1.09002 * 110.92637 * 334.35093 * 4 2 1 26 26 H 1.08997 * 109.46851 * 299.89442 * 6 5 4 27 27 H 1.08999 * 109.47543 * 59.89353 * 6 5 4 28 28 H 1.09000 * 109.46974 * 179.89936 * 6 5 4 29 29 H 1.08007 * 120.00138 * 359.64361 * 8 7 5 30 30 H 0.97000 * 119.99757 * 180.02562 * 13 12 10 31 31 H 1.08000 * 120.17965 * 180.50165 * 18 9 8 32 32 H 1.07992 * 119.79745 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9169 1.0190 0.0000 4 6 2.0772 -0.7930 -1.2087 5 7 3.2841 -1.4417 -0.6522 6 6 3.5400 -2.7300 -1.3099 7 6 3.0853 -1.6112 0.7241 8 6 3.7377 -2.4484 1.6187 9 6 3.3735 -2.4472 2.9744 10 6 4.0349 -3.3001 3.8880 11 1 4.4990 -4.2102 3.5380 12 6 4.0878 -2.9649 5.2455 13 7 3.8331 -1.7397 5.6272 14 14 4.5224 -4.2667 6.5127 15 1 4.7638 -5.5625 5.8285 16 1 5.7483 -3.8565 7.2436 17 1 3.4001 -4.4165 7.4735 18 6 2.3468 -1.5935 3.4208 19 6 1.7063 -0.7710 2.5218 20 6 2.0670 -0.7784 1.1857 21 1 -0.3633 0.4852 0.9059 22 1 -0.3634 0.5421 -0.8731 23 1 -0.3633 -1.0271 -0.0327 24 1 2.3413 -0.1204 -2.0247 25 1 1.3566 -1.5395 -1.5430 26 1 2.6875 -3.3917 -1.1569 27 1 3.6885 -2.5697 -2.3778 28 1 4.4339 -3.1846 -0.8829 29 1 4.5259 -3.1003 1.2718 30 1 3.8702 -1.5073 6.5683 31 1 2.0663 -1.5807 4.4636 32 1 0.9182 -0.1155 2.8614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260353792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:09 Heat of formation + Delta-G solvation = 20.695066 kcal Electronic energy + Delta-G solvation = -14351.814416 eV Core-core repulsion = 12083.533102 eV Total energy + Delta-G solvation = -2268.281314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54738 -35.89933 -33.40625 -32.82188 -29.19403 -28.41060 -26.95318 -24.94280 -23.59998 -21.25513 -19.98479 -19.31711 -17.13086 -15.37871 -15.21441 -14.81552 -14.49748 -13.85131 -13.49627 -12.84816 -12.66464 -12.31733 -11.95575 -11.84462 -11.65102 -11.48679 -11.17707 -10.97227 -10.82236 -10.66239 -10.28845 -10.13776 -9.88000 -9.34268 -9.11301 -8.71697 -7.38154 -6.74360 -6.58144 -4.33850 2.76886 2.99606 3.08795 3.14071 3.19873 3.94866 4.50201 4.69110 5.22012 5.38527 5.57843 5.68806 5.70680 5.86899 5.97698 5.99704 6.02351 6.19882 6.32042 6.41869 6.50669 6.74324 6.82553 6.95412 7.06924 7.11348 7.31739 7.57493 7.81095 7.98128 8.09288 8.20833 8.34584 8.67500 8.92499 9.00230 10.21766 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044336 B = 0.008305 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.392346 B = 3370.462028 C = 3854.012510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 H 0.069 0.931 4 C 0.052 3.948 5 N -0.484 5.484 6 C 0.023 3.977 7 C 0.105 3.895 8 C -0.232 4.232 9 C 0.128 3.872 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.793 5.793 14 Si 0.907 3.093 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.176 4.176 19 C -0.068 4.068 20 C -0.250 4.250 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.279 0.721 31 H 0.120 0.880 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 0.114 -6.507 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 H 0.088 0.912 4 C -0.075 4.075 5 N -0.200 5.200 6 C -0.124 4.124 7 C 0.009 3.991 8 C -0.254 4.254 9 C 0.125 3.875 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.195 4.195 19 C -0.087 4.087 20 C -0.253 4.253 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.195 0.565 -6.475 7.242 hybrid contribution -0.256 -0.903 0.745 1.199 sum -3.451 -0.338 -5.730 6.697 Atomic orbital electron populations 1.21735 0.95525 1.01284 1.00706 1.20531 0.94457 0.98124 0.92623 0.91243 1.23210 0.89807 0.97108 0.97377 1.60692 1.35149 1.21294 1.02850 1.22425 1.01262 0.90193 0.98518 1.19222 0.95560 0.96836 0.87463 1.20305 1.05296 1.06043 0.93752 1.17328 0.89422 0.90381 0.90355 1.19555 1.31309 1.06865 0.91538 0.90483 1.25885 0.93048 0.95498 0.99670 1.69843 1.36160 1.17805 1.18090 0.86283 0.78686 0.81725 0.80137 1.18447 1.20010 1.19736 1.21242 0.98424 1.00947 0.98928 1.19933 0.98726 0.98541 0.91512 1.19729 1.04439 1.06957 0.94200 0.92692 0.93633 0.92998 0.90562 0.93405 0.95226 0.92109 0.91116 0.89131 0.90979 0.86180 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.11 37.16 0.34 -1.73 16 2 C -0.04 -0.71 3.67 -90.47 -0.33 -1.04 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.05 0.88 6.43 -2.45 -0.02 0.86 16 5 N -0.48 -9.70 5.31 -176.91 -0.94 -10.64 16 6 C 0.02 0.39 9.15 60.06 0.55 0.94 16 7 C 0.11 2.48 5.95 -83.43 -0.50 1.98 16 8 C -0.23 -5.91 9.25 -38.57 -0.36 -6.26 16 9 C 0.13 3.48 5.56 -106.93 -0.59 2.89 16 10 C -0.46 -12.43 9.05 -37.75 -0.34 -12.78 16 11 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 12 C 0.08 1.94 5.15 -17.35 -0.09 1.85 16 13 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 14 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.18 -4.63 8.70 -38.83 -0.34 -4.97 16 19 C -0.07 -1.63 9.84 -39.74 -0.39 -2.02 16 20 C -0.25 -5.70 5.69 -103.65 -0.59 -6.29 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.76 7.60 -51.93 -0.39 0.37 16 26 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.21 7.29 -51.93 -0.38 0.83 16 29 H 0.09 2.21 7.35 -52.48 -0.39 1.83 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 31 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -28.19 264.31 -8.44 -36.63 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.41 Total: 2.94 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.66 Total: -26.57 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: -0.33 Total: -30.74 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.19 -8.44 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.328 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds