Wall clock time and date at job start Mon Mar 30 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.79132 * 2 1 4 4 C 1.54572 * 110.73108 * 236.73160 * 2 1 3 5 5 N 1.47886 * 102.68876 * 215.98145 * 4 2 1 6 6 C 1.46895 * 111.00268 * 149.28660 * 5 4 2 7 7 C 1.40092 * 107.87899 * 27.46359 * 5 4 2 8 8 C 1.38805 * 129.75368 * 161.60687 * 7 5 4 9 9 C 1.40379 * 119.99781 * 179.60776 * 8 7 5 10 10 C 1.41403 * 120.13818 * 179.91427 * 9 8 7 11 11 H 1.07997 * 119.99630 * 334.54635 * 10 9 8 12 12 C 1.39929 * 120.00072 * 154.55056 * 10 9 8 13 13 N 1.30829 * 119.99967 * 343.05186 * 12 10 9 14 14 Si 1.86798 * 119.99967 * 163.05855 * 12 10 9 15 15 H 1.48503 * 109.47207 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47415 * 119.99773 * 14 12 10 17 17 H 1.48495 * 109.47386 * 239.99838 * 14 12 10 18 18 C 1.40782 * 119.72840 * 359.93014 * 9 8 7 19 19 C 1.37653 * 119.64408 * 0.22635 * 18 9 8 20 20 C 1.38394 * 120.40028 * 359.92994 * 19 18 9 21 21 H 1.09001 * 109.46889 * 298.17477 * 1 2 3 22 22 H 1.09004 * 109.47425 * 58.16637 * 1 2 3 23 23 H 1.08996 * 109.47213 * 178.17462 * 1 2 3 24 24 H 1.08996 * 110.77046 * 97.67704 * 4 2 1 25 25 H 1.09002 * 110.92637 * 334.35093 * 4 2 1 26 26 H 1.08997 * 109.46851 * 299.89442 * 6 5 4 27 27 H 1.08999 * 109.47543 * 59.89353 * 6 5 4 28 28 H 1.09000 * 109.46974 * 179.89936 * 6 5 4 29 29 H 1.08007 * 120.00138 * 359.64361 * 8 7 5 30 30 H 0.97000 * 119.99757 * 180.02562 * 13 12 10 31 31 H 1.08000 * 120.17965 * 180.50165 * 18 9 8 32 32 H 1.07992 * 119.79745 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9169 1.0190 0.0000 4 6 2.0772 -0.7930 -1.2087 5 7 3.2841 -1.4417 -0.6522 6 6 3.5400 -2.7300 -1.3099 7 6 3.0853 -1.6112 0.7241 8 6 3.7377 -2.4484 1.6187 9 6 3.3735 -2.4472 2.9744 10 6 4.0349 -3.3001 3.8880 11 1 4.4990 -4.2102 3.5380 12 6 4.0878 -2.9649 5.2455 13 7 3.8331 -1.7397 5.6272 14 14 4.5224 -4.2667 6.5127 15 1 4.7638 -5.5625 5.8285 16 1 5.7483 -3.8565 7.2436 17 1 3.4001 -4.4165 7.4735 18 6 2.3468 -1.5935 3.4208 19 6 1.7063 -0.7710 2.5218 20 6 2.0670 -0.7784 1.1857 21 1 -0.3633 0.4852 0.9059 22 1 -0.3634 0.5421 -0.8731 23 1 -0.3633 -1.0271 -0.0327 24 1 2.3413 -0.1204 -2.0247 25 1 1.3566 -1.5395 -1.5430 26 1 2.6875 -3.3917 -1.1569 27 1 3.6885 -2.5697 -2.3778 28 1 4.4339 -3.1846 -0.8829 29 1 4.5259 -3.1003 1.2718 30 1 3.8702 -1.5073 6.5683 31 1 2.0663 -1.5807 4.4636 32 1 0.9182 -0.1155 2.8614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:09 Heat of formation + Delta-G solvation = 4.632782 kcal Electronic energy + Delta-G solvation = -14352.510929 eV Core-core repulsion = 12083.533102 eV Total energy + Delta-G solvation = -2268.977827 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19880 -37.71713 -35.13266 -34.45907 -31.03047 -30.19563 -28.35279 -26.78258 -25.07850 -22.97106 -21.82176 -20.93984 -19.00349 -17.15411 -16.84315 -16.37112 -16.22357 -15.52077 -14.97931 -14.52063 -14.31179 -13.92226 -13.57530 -13.36958 -13.18353 -12.95042 -12.81345 -12.55953 -12.42770 -12.38479 -11.86289 -11.70280 -11.61726 -11.14708 -10.98648 -10.42432 -9.31431 -8.63691 -8.36007 -6.34801 0.95479 1.07562 1.37817 1.49770 1.53400 2.21146 2.68264 3.08673 3.68138 3.83284 3.95947 4.26893 4.36144 4.52219 4.57008 4.62442 4.72217 4.78693 4.87355 4.98802 5.09056 5.10725 5.16269 5.21928 5.27932 5.43030 5.47416 5.84988 5.94987 6.05128 6.17780 6.40578 6.45807 6.72885 6.94969 7.05731 8.34826 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044336 B = 0.008305 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.392346 B = 3370.462028 C = 3854.012510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 H 0.075 0.925 4 C 0.054 3.946 5 N -0.497 5.497 6 C 0.024 3.976 7 C 0.102 3.898 8 C -0.255 4.255 9 C 0.099 3.901 10 C -0.502 4.502 11 H 0.072 0.928 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.984 3.016 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.262 1.262 18 C -0.204 4.204 19 C -0.071 4.071 20 C -0.256 4.256 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.288 0.712 31 H 0.104 0.896 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 0.474 -7.996 9.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 H 0.093 0.907 4 C -0.072 4.072 5 N -0.212 5.212 6 C -0.123 4.123 7 C 0.005 3.995 8 C -0.278 4.278 9 C 0.096 3.904 10 C -0.531 4.531 11 H 0.090 0.910 12 C -0.179 4.179 13 N -0.452 5.452 14 Si 0.804 3.196 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.187 1.187 18 C -0.224 4.224 19 C -0.090 4.090 20 C -0.260 4.260 21 H 0.071 0.929 22 H 0.099 0.901 23 H 0.064 0.936 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.942 0.936 -7.998 8.966 hybrid contribution -0.038 -0.920 1.049 1.396 sum -3.980 0.016 -6.949 8.008 Atomic orbital electron populations 1.21675 0.93046 1.01522 1.02325 1.20671 0.96562 0.97792 0.90783 0.90658 1.23388 0.88828 0.97572 0.97404 1.60670 1.36711 1.22810 1.01024 1.22493 1.00739 0.88797 1.00274 1.19492 0.94794 0.95733 0.89447 1.20395 1.06149 1.07287 0.93938 1.17660 0.90125 0.91190 0.91392 1.19789 1.33011 1.07286 0.93045 0.90951 1.26757 0.92437 0.97601 1.01128 1.69895 1.36730 1.19534 1.19048 0.85143 0.78827 0.78475 0.77130 1.18277 1.18986 1.18677 1.21189 0.99671 1.02753 0.98774 1.20173 0.98771 0.98029 0.92027 1.20336 1.03855 1.06756 0.95014 0.92890 0.90147 0.93571 0.87323 0.91854 0.95299 0.88360 0.92215 0.89476 0.90146 0.87799 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.11 71.98 0.66 -2.82 16 2 C -0.04 -1.33 3.67 -10.70 -0.04 -1.37 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.05 1.62 6.43 86.65 0.56 2.17 16 5 N -0.50 -18.84 5.31 -713.63 -3.79 -22.63 16 6 C 0.02 0.75 9.15 127.69 1.17 1.91 16 7 C 0.10 4.80 5.95 38.24 0.23 5.02 16 8 C -0.26 -13.47 9.25 22.93 0.21 -13.26 16 9 C 0.10 5.64 5.56 -21.36 -0.12 5.52 16 10 C -0.50 -28.23 9.05 23.46 0.21 -28.02 16 11 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 12 C 0.04 1.84 5.15 85.25 0.44 2.28 16 13 N -0.83 -44.52 10.95 21.82 0.24 -44.28 16 14 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 C -0.20 -11.20 8.70 22.75 0.20 -11.00 16 19 C -0.07 -3.44 9.84 22.17 0.22 -3.22 16 20 C -0.26 -11.48 5.69 -19.24 -0.11 -11.59 16 21 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.05 1.30 8.11 -2.39 -0.02 1.28 16 24 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.06 1.73 7.60 -2.39 -0.02 1.72 16 26 H 0.03 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.00 7.29 -2.39 -0.02 1.98 16 29 H 0.09 4.47 7.35 -2.91 -0.02 4.45 16 30 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 31 H 0.10 5.92 6.17 -2.91 -0.02 5.90 16 32 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -62.97 264.31 3.20 -59.78 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.09 Total: 20.26 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.62 Total: -54.37 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -3.55 Total: -66.91 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -62.97 3.20 -59.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.410 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds