Wall clock time and date at job start Mon Mar 30 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.38183 * 2 1 4 4 C 1.53744 * 110.42045 * 237.61783 * 2 1 3 5 5 N 1.46535 * 105.18644 * 241.24191 * 4 2 1 6 6 C 1.39571 * 110.08797 * 359.97438 * 5 4 2 7 7 C 1.39673 * 129.32151 * 180.02562 * 6 5 4 8 8 C 1.37825 * 120.28315 * 179.97438 * 7 6 5 9 9 C 1.38305 * 120.23268 * 0.02562 * 8 7 6 10 10 C 1.38236 * 119.82960 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.92223 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46812 * 264.99679 * 11 10 9 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.38168 * 120.15043 * 0.27416 * 10 9 8 21 21 H 1.08997 * 109.47477 * 180.92530 * 1 2 3 22 22 H 1.08999 * 109.47122 * 300.92788 * 1 2 3 23 23 H 1.09005 * 109.46981 * 60.92126 * 1 2 3 24 24 H 1.08995 * 110.29904 * 122.31093 * 4 2 1 25 25 H 1.09006 * 110.38465 * 0.20968 * 4 2 1 26 26 H 0.97002 * 124.95194 * 180.02562 * 5 4 2 27 27 H 1.08007 * 119.86283 * 359.95139 * 7 6 5 28 28 H 1.08003 * 119.88706 * 179.97438 * 8 7 6 29 29 H 1.08001 * 120.08938 * 179.97438 * 9 8 7 30 30 H 1.09004 * 109.47035 * 145.00051 * 11 10 9 31 31 H 1.08997 * 109.47667 * 24.99720 * 11 10 9 32 32 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9096 1.0217 0.0000 4 6 2.0665 -0.7717 -1.2168 5 7 2.8380 -1.8841 -0.6561 6 6 2.8043 -1.8362 0.7383 7 6 3.3987 -2.6925 1.6680 8 6 3.2429 -2.4677 3.0189 9 6 2.4961 -1.3923 3.4643 10 6 1.9047 -0.5402 2.5504 11 6 1.0909 0.6326 3.0335 12 6 -0.3658 0.2492 3.0772 13 1 -0.6718 -0.7444 2.7850 14 6 -1.3081 1.1671 3.4905 15 7 -2.5794 0.8323 3.5292 16 14 -0.7791 2.8860 3.9953 17 1 -0.7939 3.7773 2.8076 18 1 0.5937 2.8358 4.5594 19 1 -1.7165 3.4114 5.0202 20 6 2.0537 -0.7643 1.1952 21 1 -0.3634 -1.0275 0.0166 22 1 -0.3633 0.5282 0.8815 23 1 -0.3633 0.4995 -0.8982 24 1 2.7105 -0.1297 -1.8177 25 1 1.2413 -1.1500 -1.8203 26 1 3.3047 -2.5555 -1.1781 27 1 3.9826 -3.5347 1.3269 28 1 3.7050 -3.1342 3.7321 29 1 2.3752 -1.2185 4.5233 30 1 1.2251 1.4731 2.3524 31 1 1.4217 0.9178 4.0321 32 1 -3.2424 1.4781 3.8195 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260370842.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:58 Heat of formation + Delta-G solvation = 2.973551 kcal Electronic energy + Delta-G solvation = -14537.391869 eV Core-core repulsion = 12268.342092 eV Total energy + Delta-G solvation = -2269.049777 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29782 -37.40819 -35.60936 -33.92590 -31.92545 -30.06485 -29.24779 -26.43982 -24.81075 -22.88348 -22.23951 -20.78434 -18.88274 -17.84552 -16.65554 -16.36468 -16.14226 -16.02613 -15.16644 -14.84525 -14.14094 -14.05141 -13.66615 -13.43310 -13.32808 -13.02609 -12.66620 -12.55136 -12.39598 -12.00353 -11.92751 -11.68037 -11.56667 -11.10335 -10.77154 -10.69204 -9.24821 -8.22820 -8.10218 -6.22626 0.71803 0.86033 1.37453 1.39804 1.50953 2.39047 2.63817 3.09146 3.10843 3.84342 3.89296 4.24922 4.31721 4.34747 4.55397 4.67326 4.74191 4.81532 4.86367 4.96029 5.02344 5.12945 5.19118 5.31194 5.41071 5.60146 5.66505 5.74456 5.83141 5.90877 6.14774 6.34023 6.48488 6.79567 7.14965 7.36168 8.93201 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.010451 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.525013 B = 2678.626857 C = 3156.565638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 H 0.082 0.918 4 C 0.127 3.873 5 N -0.741 5.741 6 C 0.183 3.817 7 C -0.203 4.203 8 C -0.076 4.076 9 C -0.197 4.197 10 C -0.011 4.011 11 C 0.022 3.978 12 C -0.488 4.488 13 H 0.029 0.971 14 C 0.012 3.988 15 N -0.947 5.947 16 Si 0.938 3.062 17 H -0.265 1.265 18 H -0.250 1.250 19 H -0.286 1.286 20 C -0.187 4.187 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.421 0.579 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.115 0.885 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -2.874 -7.822 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 H 0.101 0.899 4 C 0.003 3.997 5 N -0.376 5.376 6 C 0.080 3.920 7 C -0.226 4.226 8 C -0.094 4.094 9 C -0.217 4.217 10 C -0.012 4.012 11 C -0.015 4.015 12 C -0.526 4.526 13 H 0.048 0.952 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.174 1.174 19 H -0.212 1.212 20 C -0.192 4.192 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.133 0.867 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.316 -2.739 -7.941 14.908 hybrid contribution -0.397 0.393 0.315 0.641 sum 11.920 -2.345 -7.627 14.344 Atomic orbital electron populations 1.21940 0.94280 1.00846 1.03021 1.20539 0.95963 0.98881 0.91595 0.89936 1.21923 0.95175 0.87872 0.94762 1.44594 1.58675 1.32548 1.01796 1.18531 0.93938 0.94007 0.85540 1.20473 1.07698 1.02362 0.92040 1.20977 0.96786 0.96263 0.95372 1.20908 1.03535 0.98241 0.99000 1.19495 0.93296 0.96331 0.92079 1.18634 0.93651 0.93137 0.96087 1.20873 0.90321 0.98607 1.42824 0.95242 1.25812 0.94613 1.02731 0.95345 1.70049 1.01978 1.36989 1.49779 0.85834 0.79152 0.79973 0.78848 1.18981 1.17416 1.21163 1.19870 1.05142 1.00419 0.93763 0.95278 0.91380 0.91696 0.89560 0.90874 0.73979 0.84352 0.83586 0.86741 0.95679 0.95815 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.73 71.98 0.63 -5.07 16 2 C -0.05 -1.79 3.18 -11.12 -0.04 -1.82 16 3 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.13 3.30 7.61 86.62 0.66 3.96 16 5 N -0.74 -19.62 6.53 -337.80 -2.20 -21.83 16 6 C 0.18 6.20 7.03 38.34 0.27 6.47 16 7 C -0.20 -6.26 10.07 22.52 0.23 -6.04 16 8 C -0.08 -2.45 10.02 22.19 0.22 -2.22 16 9 C -0.20 -7.79 9.69 22.29 0.22 -7.58 16 10 C -0.01 -0.50 5.07 -19.88 -0.10 -0.60 16 11 C 0.02 1.08 3.52 29.10 0.10 1.18 16 12 C -0.49 -27.90 6.93 25.60 0.18 -27.73 16 13 H 0.03 1.91 7.98 -2.91 -0.02 1.88 16 14 C 0.01 0.68 5.47 84.65 0.46 1.15 16 15 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 16 Si 0.94 44.03 27.47 68.60 1.88 45.92 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 20 C -0.19 -7.46 5.41 -19.63 -0.11 -7.56 16 21 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 3.30 4.80 -2.39 -0.01 3.29 16 23 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 1.76 7.71 -2.38 -0.02 1.74 16 26 H 0.42 8.29 8.96 -92.71 -0.83 7.46 16 27 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.03 1.19 7.27 -2.39 -0.02 1.17 16 31 H 0.02 1.14 7.11 -2.39 -0.02 1.12 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -66.99 260.33 2.93 -64.06 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.23 Total: 16.27 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 2.72 Total: -45.87 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.91 Total: -80.38 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Total: -66.99 2.93 -64.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370842.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.031 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds