Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.26709 * 2 1 4 4 C 1.53749 * 110.29978 * 237.93197 * 2 1 3 5 5 C 1.51221 * 104.54063 * 240.97857 * 4 2 1 6 6 C 1.38167 * 130.99062 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.15053 * 180.02562 * 6 5 4 8 8 C 1.50709 * 120.07926 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.46807 * 270.01413 * 8 7 6 10 10 H 1.08002 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99912 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00311 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99884 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47258 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47000 * 120.00029 * 13 11 9 16 16 H 1.48499 * 109.46789 * 239.99454 * 13 11 9 17 17 C 1.38298 * 119.83716 * 359.97438 * 7 6 5 18 18 C 1.37835 * 120.22585 * 0.03467 * 17 7 6 19 19 C 1.38600 * 108.53412 * 359.97438 * 5 4 2 20 20 N 1.39782 * 111.68610 * 0.05836 * 19 5 4 21 21 H 1.08997 * 109.47059 * 180.70022 * 1 2 3 22 22 H 1.09001 * 109.46771 * 300.70364 * 1 2 3 23 23 H 1.08999 * 109.47017 * 60.69710 * 1 2 3 24 24 H 1.09005 * 110.42063 * 359.74355 * 4 2 1 25 25 H 1.08999 * 110.42466 * 122.21126 * 4 2 1 26 26 H 1.08003 * 119.92255 * 359.97438 * 6 5 4 27 27 H 1.09000 * 109.47152 * 30.01714 * 8 7 6 28 28 H 1.09000 * 109.46755 * 150.01987 * 8 7 6 29 29 H 0.97002 * 120.00900 * 179.97438 * 12 11 9 30 30 H 1.07995 * 119.88600 * 180.02562 * 17 7 6 31 31 H 1.08004 * 119.85278 * 179.97438 * 18 17 7 32 32 H 0.96999 * 125.07563 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0634 -0.7656 -1.2220 5 6 2.8612 -1.9085 -0.6354 6 6 3.5700 -2.9258 -1.2451 7 6 4.2282 -3.8694 -0.4788 8 6 5.0004 -4.9787 -1.1455 9 6 4.0919 -6.1605 -1.3668 10 1 3.0587 -6.1129 -1.0561 11 6 4.5798 -7.3024 -1.9658 12 7 5.8379 -7.3602 -2.3445 13 14 3.4534 -8.7671 -2.2407 14 1 2.0954 -8.4498 -1.7307 15 1 3.3785 -9.0682 -3.6930 16 1 3.9911 -9.9475 -1.5177 17 6 4.1765 -3.7930 0.9011 18 6 3.4705 -2.7801 1.5139 19 6 2.8029 -1.8228 0.7467 20 7 2.0391 -0.7292 1.1646 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5247 0.8836 23 1 -0.3633 0.5030 -0.8962 24 1 1.2373 -1.1470 -1.8222 25 1 2.7061 -0.1223 -1.8231 26 1 3.6091 -2.9844 -2.3228 27 1 5.3828 -4.6297 -2.1047 28 1 5.8336 -5.2752 -0.5083 29 1 6.1813 -8.1637 -2.7656 30 1 4.6908 -4.5295 1.5005 31 1 3.4337 -2.7264 2.5920 32 1 1.8708 -0.4875 2.0888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260444421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = 15.484433 kcal Electronic energy + Delta-G solvation = -13883.306897 eV Core-core repulsion = 11614.799633 eV Total energy + Delta-G solvation = -2268.507264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87797 -36.50804 -33.09413 -31.67568 -30.73830 -29.41404 -26.89726 -25.67032 -22.92148 -21.40641 -20.89711 -19.60883 -16.92361 -16.21629 -15.61442 -14.88340 -14.63051 -13.95958 -13.56244 -13.12856 -12.82982 -12.39990 -12.35906 -12.12357 -11.76969 -11.59315 -11.36514 -11.18398 -10.97904 -10.60732 -10.48439 -10.02897 -9.75085 -9.40134 -8.95905 -8.35460 -8.04875 -6.67084 -5.95041 -3.99585 2.13136 2.38766 3.33496 3.40944 3.46553 3.70877 4.44574 4.62172 4.78038 4.98866 5.13197 5.36683 5.39525 5.54480 5.59279 5.76692 5.84418 5.92107 6.05758 6.17918 6.23185 6.42450 6.47515 6.75190 7.01145 7.30511 7.32083 7.34747 7.63091 7.90588 8.00393 8.00685 8.22323 8.43873 9.06574 9.63876 11.13159 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.006508 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.917402 B = 4301.509788 C = 4482.624266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.066 0.934 4 C -0.077 4.077 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.079 4.079 8 C 0.054 3.946 9 C -0.507 4.507 10 H 0.057 0.943 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.082 4.082 18 C -0.180 4.180 19 C 0.161 3.839 20 N -0.753 5.753 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 13.512 4.762 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.084 0.916 4 C -0.114 4.114 5 C -0.178 4.178 6 C -0.087 4.087 7 C -0.080 4.080 8 C 0.017 3.983 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.101 4.101 18 C -0.202 4.202 19 C 0.062 3.938 20 N -0.389 5.389 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.133 0.867 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.636 13.503 4.613 16.184 hybrid contribution -0.697 -0.803 0.276 1.099 sum -8.333 12.700 4.889 15.957 Atomic orbital electron populations 1.22253 0.95674 1.02519 1.01650 1.21198 0.93377 0.95264 0.85948 0.91584 1.21027 0.98863 0.95044 0.96508 1.19776 1.05375 0.99757 0.92927 1.20284 0.96125 0.92820 0.99473 1.20378 0.98295 0.96278 0.93082 1.18237 0.94457 0.90157 0.95428 1.21177 0.96705 0.97981 1.38669 0.92500 1.25013 0.95075 0.98630 0.95718 1.69967 1.13741 1.28382 1.41489 0.86527 0.81045 0.82630 0.77802 1.19722 1.21017 1.21011 1.20735 0.98068 0.96439 0.94816 1.20235 1.04445 0.97393 0.98136 1.18193 0.93413 0.89085 0.93147 1.44665 1.57815 1.29724 1.06654 0.92028 0.92829 0.91727 0.90313 0.90557 0.86737 0.95623 0.95575 0.93022 0.86374 0.87670 0.76026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.36 37.16 0.35 -1.26 16 2 C 0.15 1.75 4.31 -67.52 -0.29 1.45 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.08 -1.06 6.58 -27.24 -0.18 -1.24 16 5 C -0.17 -3.12 6.23 -104.26 -0.65 -3.77 16 6 C -0.07 -1.41 9.70 -39.61 -0.38 -1.79 16 7 C -0.08 -1.78 5.07 -104.60 -0.53 -2.31 16 8 C 0.05 1.43 5.11 -29.03 -0.15 1.28 16 9 C -0.51 -14.53 9.09 -34.44 -0.31 -14.84 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.92 13.28 55.43 0.74 -26.18 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.08 -1.68 9.68 -39.71 -0.38 -2.06 16 18 C -0.18 -3.22 10.07 -39.19 -0.39 -3.62 16 19 C 0.16 2.78 7.03 -83.56 -0.59 2.19 16 20 N -0.75 -10.19 6.19 -51.61 -0.32 -10.51 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 27 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 31 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.40 4.52 8.96 -40.82 -0.37 4.15 16 LS Contribution 271.81 15.07 4.10 4.10 Total: -1.00 -30.89 271.81 -8.65 -39.54 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.53 Total: 0.62 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.61 Total: -24.44 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.42 Total: -36.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.89 -8.65 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.020 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds