Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.26709 * 2 1 4 4 C 1.53749 * 110.29978 * 237.93197 * 2 1 3 5 5 C 1.51221 * 104.54063 * 240.97857 * 4 2 1 6 6 C 1.38167 * 130.99062 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.15053 * 180.02562 * 6 5 4 8 8 C 1.50709 * 120.07926 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.46807 * 270.01413 * 8 7 6 10 10 H 1.08002 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99912 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00311 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99884 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47258 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47000 * 120.00029 * 13 11 9 16 16 H 1.48499 * 109.46789 * 239.99454 * 13 11 9 17 17 C 1.38298 * 119.83716 * 359.97438 * 7 6 5 18 18 C 1.37835 * 120.22585 * 0.03467 * 17 7 6 19 19 C 1.38600 * 108.53412 * 359.97438 * 5 4 2 20 20 N 1.39782 * 111.68610 * 0.05836 * 19 5 4 21 21 H 1.08997 * 109.47059 * 180.70022 * 1 2 3 22 22 H 1.09001 * 109.46771 * 300.70364 * 1 2 3 23 23 H 1.08999 * 109.47017 * 60.69710 * 1 2 3 24 24 H 1.09005 * 110.42063 * 359.74355 * 4 2 1 25 25 H 1.08999 * 110.42466 * 122.21126 * 4 2 1 26 26 H 1.08003 * 119.92255 * 359.97438 * 6 5 4 27 27 H 1.09000 * 109.47152 * 30.01714 * 8 7 6 28 28 H 1.09000 * 109.46755 * 150.01987 * 8 7 6 29 29 H 0.97002 * 120.00900 * 179.97438 * 12 11 9 30 30 H 1.07995 * 119.88600 * 180.02562 * 17 7 6 31 31 H 1.08004 * 119.85278 * 179.97438 * 18 17 7 32 32 H 0.96999 * 125.07563 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0634 -0.7656 -1.2220 5 6 2.8612 -1.9085 -0.6354 6 6 3.5700 -2.9258 -1.2451 7 6 4.2282 -3.8694 -0.4788 8 6 5.0004 -4.9787 -1.1455 9 6 4.0919 -6.1605 -1.3668 10 1 3.0587 -6.1129 -1.0561 11 6 4.5798 -7.3024 -1.9658 12 7 5.8379 -7.3602 -2.3445 13 14 3.4534 -8.7671 -2.2407 14 1 2.0954 -8.4498 -1.7307 15 1 3.3785 -9.0682 -3.6930 16 1 3.9911 -9.9475 -1.5177 17 6 4.1765 -3.7930 0.9011 18 6 3.4705 -2.7801 1.5139 19 6 2.8029 -1.8228 0.7467 20 7 2.0391 -0.7292 1.1646 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5247 0.8836 23 1 -0.3633 0.5030 -0.8962 24 1 1.2373 -1.1470 -1.8222 25 1 2.7061 -0.1223 -1.8231 26 1 3.6091 -2.9844 -2.3228 27 1 5.3828 -4.6297 -2.1047 28 1 5.8336 -5.2752 -0.5083 29 1 6.1813 -8.1637 -2.7656 30 1 4.6908 -4.5295 1.5005 31 1 3.4337 -2.7264 2.5920 32 1 1.8708 -0.4875 2.0888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = -2.923511 kcal Electronic energy + Delta-G solvation = -13884.105126 eV Core-core repulsion = 11614.799633 eV Total energy + Delta-G solvation = -2269.305493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18949 -37.92453 -35.13556 -33.08627 -32.19742 -30.84970 -28.49817 -27.06687 -24.85234 -22.85867 -21.93646 -21.16874 -18.47595 -18.20039 -16.81531 -16.67328 -15.94586 -15.57005 -14.90997 -14.51958 -14.45148 -13.85896 -13.61015 -13.50898 -13.21758 -13.12582 -12.92991 -12.57709 -12.51964 -12.37979 -12.00002 -11.59597 -11.55223 -11.36521 -10.58610 -10.57941 -9.53693 -8.28386 -7.91666 -6.30275 0.63080 0.85034 1.39769 1.39825 1.53962 2.41462 2.59697 3.07741 3.12629 3.77710 3.82808 4.17221 4.27583 4.38651 4.48635 4.65507 4.69538 4.75217 4.84791 4.93248 5.09533 5.14962 5.21629 5.38514 5.39257 5.42347 5.62467 5.70412 5.80191 5.91016 6.20491 6.22810 6.47383 6.82938 7.13736 7.38109 8.92234 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.006508 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.917402 B = 4301.509788 C = 4482.624266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.079 4.079 5 C -0.183 4.183 6 C -0.081 4.081 7 C -0.116 4.116 8 C 0.065 3.935 9 C -0.525 4.525 10 H 0.051 0.949 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.094 4.094 18 C -0.179 4.179 19 C 0.170 3.830 20 N -0.740 5.740 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.107 0.893 27 H -0.002 1.002 28 H 0.000 1.000 29 H 0.265 0.735 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 15.117 5.581 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.116 4.116 5 C -0.188 4.188 6 C -0.100 4.100 7 C -0.118 4.118 8 C 0.028 3.972 9 C -0.563 4.563 10 H 0.069 0.931 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.112 4.112 18 C -0.202 4.202 19 C 0.068 3.932 20 N -0.376 5.376 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.979 15.149 5.453 18.942 hybrid contribution 0.006 -1.171 0.055 1.172 sum -9.973 13.978 5.507 18.033 Atomic orbital electron populations 1.22205 0.93897 1.01883 1.03518 1.21442 0.94700 0.95761 0.83968 0.88957 1.21203 0.98812 0.93841 0.97778 1.20122 1.04799 0.99946 0.93893 1.20243 0.96962 0.93649 0.99108 1.20066 1.00678 0.96749 0.94289 1.17965 0.93959 0.91395 0.93896 1.21462 0.96715 0.99199 1.38952 0.93056 1.25938 0.96668 1.01727 0.95165 1.70089 1.15596 1.29488 1.42081 0.85399 0.78940 0.78643 0.78078 1.19098 1.20047 1.20038 1.20739 0.98998 0.97594 0.93889 1.20421 1.03557 0.96538 0.99666 1.18377 0.92515 0.89409 0.92916 1.44787 1.56368 1.28237 1.08188 0.93864 0.91157 0.89777 0.89502 0.89013 0.87490 0.98324 0.98184 0.92614 0.86754 0.84716 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.36 71.98 0.67 -1.76 16 2 C 0.15 2.83 4.31 45.24 0.20 3.03 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.08 -1.95 6.58 30.27 0.20 -1.75 16 5 C -0.18 -6.36 6.23 -19.63 -0.12 -6.48 16 6 C -0.08 -3.43 9.70 22.25 0.22 -3.21 16 7 C -0.12 -5.51 5.07 -19.85 -0.10 -5.61 16 8 C 0.06 3.67 5.11 29.10 0.15 3.82 16 9 C -0.53 -31.36 9.09 25.60 0.23 -31.13 16 10 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 11 C 0.00 0.16 5.46 84.65 0.46 0.62 16 12 N -0.93 -57.77 13.28 21.44 0.28 -57.48 16 13 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 C -0.09 -3.92 9.68 22.19 0.21 -3.71 16 18 C -0.18 -6.20 10.07 22.52 0.23 -5.97 16 19 C 0.17 5.50 7.03 38.31 0.27 5.77 16 20 N -0.74 -17.22 6.19 -317.21 -1.96 -19.18 16 21 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 2.01 7.71 -2.38 -0.02 2.00 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.00 -0.09 8.09 -2.39 -0.02 -0.11 16 28 H 0.00 -0.01 8.09 -2.39 -0.02 -0.03 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 31 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 32 H 0.42 7.55 8.96 -92.71 -0.83 6.72 16 Total: -1.00 -68.73 271.81 3.24 -65.50 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.27 Total: 9.98 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 2.62 Total: -46.40 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.68 Total: -76.67 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.73 3.24 -65.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds