Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.26756 * 2 1 4 4 C 1.53753 * 110.30015 * 122.06682 * 2 1 3 5 5 C 1.51219 * 104.53545 * 119.02269 * 4 2 1 6 6 C 1.38175 * 130.98210 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.14959 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.08278 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47198 * 90.00646 * 8 7 6 10 10 H 1.08002 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00261 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99963 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47265 * 89.99899 * 13 11 9 15 15 H 1.48508 * 109.47035 * 209.99775 * 13 11 9 16 16 H 1.48498 * 109.47243 * 329.99521 * 13 11 9 17 17 C 1.38300 * 119.83535 * 0.02562 * 7 6 5 18 18 C 1.37828 * 120.22917 * 359.96885 * 17 7 6 19 19 C 1.38592 * 108.54290 * 0.02562 * 5 4 2 20 20 N 1.39579 * 111.64932 * 359.97438 * 19 5 4 21 21 H 1.08998 * 109.47122 * 299.30332 * 1 2 3 22 22 H 1.09000 * 109.47033 * 59.30124 * 1 2 3 23 23 H 1.08993 * 109.47071 * 179.30103 * 1 2 3 24 24 H 1.08995 * 110.42176 * 237.79078 * 4 2 1 25 25 H 1.09002 * 110.41946 * 0.14205 * 4 2 1 26 26 H 1.08004 * 119.92220 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.47271 * 210.00736 * 8 7 6 28 28 H 1.09006 * 109.47194 * 330.00499 * 8 7 6 29 29 H 0.97001 * 120.00065 * 180.02562 * 12 11 9 30 30 H 1.07997 * 119.88554 * 179.97438 * 17 7 6 31 31 H 1.07998 * 119.85969 * 180.02562 * 18 17 7 32 32 H 0.97000 * 124.95423 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0634 -0.7656 1.2220 5 6 2.8612 -1.9085 0.6353 6 6 3.5700 -2.9257 1.2451 7 6 4.2283 -3.8693 0.4790 8 6 5.0005 -4.9785 1.1456 9 6 4.0922 -6.1606 1.3665 10 1 3.0590 -6.1132 1.0556 11 6 4.5799 -7.3022 1.9664 12 7 5.8380 -7.3597 2.3454 13 14 3.4538 -8.7671 2.2407 14 1 3.5104 -9.6633 1.0581 15 1 3.8952 -9.5116 3.4475 16 1 2.0607 -8.2911 2.4349 17 6 4.1765 -3.7929 -0.9010 18 6 3.4707 -2.7801 -1.5139 19 6 2.8029 -1.8228 -0.7467 20 7 2.0407 -0.7302 -1.1633 21 1 -0.3633 0.5030 0.8961 22 1 -0.3633 0.5246 -0.8837 23 1 -0.3633 -1.0275 -0.0125 24 1 2.7060 -0.1223 1.8231 25 1 1.2373 -1.1453 1.8233 26 1 3.6091 -2.9842 2.3229 27 1 5.8339 -5.2748 0.5087 28 1 5.3825 -4.6296 2.1051 29 1 6.1812 -8.1630 2.7671 30 1 4.6909 -4.5295 -1.5004 31 1 3.4339 -2.7264 -2.5919 32 1 1.8733 -0.4896 -2.0879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260444423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 15.506199 kcal Electronic energy + Delta-G solvation = -13883.795524 eV Core-core repulsion = 11615.289203 eV Total energy + Delta-G solvation = -2268.506320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88965 -36.51029 -33.09230 -31.68531 -30.73593 -29.41826 -26.89505 -25.67032 -22.91995 -21.40842 -20.89887 -19.60998 -16.92576 -16.21239 -15.61963 -14.88523 -14.63162 -13.96156 -13.56094 -13.12872 -12.83017 -12.39974 -12.35151 -12.12620 -11.77020 -11.59270 -11.37049 -11.17516 -10.98679 -10.58720 -10.50059 -10.02498 -9.76523 -9.39809 -8.96801 -8.34824 -8.04762 -6.66683 -5.94784 -3.99359 2.13252 2.38999 3.34762 3.40716 3.45378 3.70916 4.44655 4.62231 4.77910 4.98975 5.13130 5.36768 5.39596 5.54427 5.59276 5.76666 5.84567 5.91980 6.05844 6.17988 6.23039 6.42594 6.47724 6.75303 7.01174 7.30846 7.32321 7.34947 7.63119 7.90794 8.00571 8.00885 8.22173 8.44059 9.06499 9.63986 11.13383 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.006508 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.882407 B = 4301.160918 C = 4482.235563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.066 0.934 4 C -0.077 4.077 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.079 4.079 8 C 0.054 3.946 9 C -0.508 4.508 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.082 4.082 18 C -0.180 4.180 19 C 0.162 3.838 20 N -0.752 5.752 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 13.511 -4.759 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.084 0.916 4 C -0.114 4.114 5 C -0.179 4.179 6 C -0.087 4.087 7 C -0.081 4.081 8 C 0.018 3.982 9 C -0.546 4.546 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.100 4.100 18 C -0.202 4.202 19 C 0.062 3.938 20 N -0.388 5.388 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.633 13.502 -4.602 16.179 hybrid contribution -0.707 -0.804 -0.289 1.109 sum -8.340 12.699 -4.891 15.961 Atomic orbital electron populations 1.22251 0.95660 1.02525 1.01659 1.21201 0.93374 0.95259 0.85944 0.91566 1.21023 0.98867 0.95056 0.96501 1.19775 1.05411 0.99771 0.92930 1.20285 0.96112 0.92814 0.99469 1.20374 0.98317 0.96290 0.93080 1.18229 0.94445 0.90142 0.95422 1.21138 0.96701 0.98020 1.38751 0.92560 1.25014 0.95089 0.98623 0.95699 1.69963 1.13761 1.28434 1.41421 0.86577 0.81044 0.82670 0.77646 1.20662 1.21234 1.19874 1.20733 0.98057 0.96434 0.94815 1.20230 1.04481 0.97411 0.98128 1.18149 0.93409 0.89087 0.93167 1.44619 1.57772 1.29693 1.06680 0.91715 0.92823 0.92026 0.90574 0.90321 0.86747 0.95588 0.95629 0.92972 0.86379 0.87672 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.37 37.16 0.35 -1.26 16 2 C 0.15 1.75 4.32 -67.52 -0.29 1.45 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.08 -1.06 6.59 -27.24 -0.18 -1.24 16 5 C -0.17 -3.13 6.23 -104.26 -0.65 -3.78 16 6 C -0.07 -1.41 9.70 -39.61 -0.38 -1.79 16 7 C -0.08 -1.79 5.07 -104.60 -0.53 -2.32 16 8 C 0.05 1.44 5.11 -29.04 -0.15 1.29 16 9 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.08 -1.67 9.68 -39.71 -0.38 -2.06 16 18 C -0.18 -3.23 10.07 -39.20 -0.39 -3.62 16 19 C 0.16 2.79 7.03 -83.66 -0.59 2.20 16 20 N -0.75 -10.17 6.17 -51.67 -0.32 -10.49 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 26 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 27 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.40 4.51 8.96 -40.82 -0.37 4.15 16 LS Contribution 271.80 15.07 4.10 4.10 Total: -1.00 -30.87 271.80 -8.65 -39.52 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.53 Total: 0.64 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -3.61 Total: -24.46 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.42 Total: -36.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.87 -8.65 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.026 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds