Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.26756 * 2 1 4 4 C 1.53753 * 110.30015 * 122.06682 * 2 1 3 5 5 C 1.51219 * 104.53545 * 119.02269 * 4 2 1 6 6 C 1.38175 * 130.98210 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.14959 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.08278 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47198 * 90.00646 * 8 7 6 10 10 H 1.08002 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00261 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99963 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47265 * 89.99899 * 13 11 9 15 15 H 1.48508 * 109.47035 * 209.99775 * 13 11 9 16 16 H 1.48498 * 109.47243 * 329.99521 * 13 11 9 17 17 C 1.38300 * 119.83535 * 0.02562 * 7 6 5 18 18 C 1.37828 * 120.22917 * 359.96885 * 17 7 6 19 19 C 1.38592 * 108.54290 * 0.02562 * 5 4 2 20 20 N 1.39579 * 111.64932 * 359.97438 * 19 5 4 21 21 H 1.08998 * 109.47122 * 299.30332 * 1 2 3 22 22 H 1.09000 * 109.47033 * 59.30124 * 1 2 3 23 23 H 1.08993 * 109.47071 * 179.30103 * 1 2 3 24 24 H 1.08995 * 110.42176 * 237.79078 * 4 2 1 25 25 H 1.09002 * 110.41946 * 0.14205 * 4 2 1 26 26 H 1.08004 * 119.92220 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.47271 * 210.00736 * 8 7 6 28 28 H 1.09006 * 109.47194 * 330.00499 * 8 7 6 29 29 H 0.97001 * 120.00065 * 180.02562 * 12 11 9 30 30 H 1.07997 * 119.88554 * 179.97438 * 17 7 6 31 31 H 1.07998 * 119.85969 * 180.02562 * 18 17 7 32 32 H 0.97000 * 124.95423 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0634 -0.7656 1.2220 5 6 2.8612 -1.9085 0.6353 6 6 3.5700 -2.9257 1.2451 7 6 4.2283 -3.8693 0.4790 8 6 5.0005 -4.9785 1.1456 9 6 4.0922 -6.1606 1.3665 10 1 3.0590 -6.1132 1.0556 11 6 4.5799 -7.3022 1.9664 12 7 5.8380 -7.3597 2.3454 13 14 3.4538 -8.7671 2.2407 14 1 3.5104 -9.6633 1.0581 15 1 3.8952 -9.5116 3.4475 16 1 2.0607 -8.2911 2.4349 17 6 4.1765 -3.7929 -0.9010 18 6 3.4707 -2.7801 -1.5139 19 6 2.8029 -1.8228 -0.7467 20 7 2.0407 -0.7302 -1.1633 21 1 -0.3633 0.5030 0.8961 22 1 -0.3633 0.5246 -0.8837 23 1 -0.3633 -1.0275 -0.0125 24 1 2.7060 -0.1223 1.8231 25 1 1.2373 -1.1453 1.8233 26 1 3.6091 -2.9842 2.3229 27 1 5.8339 -5.2748 0.5087 28 1 5.3825 -4.6296 2.1051 29 1 6.1812 -8.1630 2.7671 30 1 4.6909 -4.5295 -1.5004 31 1 3.4339 -2.7264 -2.5919 32 1 1.8733 -0.4896 -2.0879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = -2.888493 kcal Electronic energy + Delta-G solvation = -13884.593177 eV Core-core repulsion = 11615.289203 eV Total energy + Delta-G solvation = -2269.303974 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20082 -37.92839 -35.13340 -33.09465 -32.19506 -30.85671 -28.49559 -27.06749 -24.85093 -22.86121 -21.93750 -21.17148 -18.47192 -18.20311 -16.82058 -16.67384 -15.94833 -15.57267 -14.90835 -14.51439 -14.44687 -13.86001 -13.61062 -13.51213 -13.21566 -13.12742 -12.93163 -12.56177 -12.52642 -12.38073 -11.99940 -11.61412 -11.55563 -11.36146 -10.58681 -10.57844 -9.53650 -8.28146 -7.91352 -6.30141 0.63137 0.85231 1.39732 1.41161 1.52755 2.41554 2.59794 3.07801 3.12766 3.77613 3.83005 4.17150 4.27555 4.38674 4.48614 4.65646 4.69574 4.75236 4.84690 4.93267 5.09477 5.15013 5.21646 5.38419 5.39180 5.42306 5.62533 5.70426 5.80233 5.91271 6.20626 6.22926 6.47645 6.82835 7.13469 7.38143 8.92224 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.006508 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.882407 B = 4301.160918 C = 4482.235563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.079 4.079 5 C -0.184 4.184 6 C -0.081 4.081 7 C -0.116 4.116 8 C 0.065 3.935 9 C -0.526 4.526 10 H 0.051 0.949 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.267 1.267 17 C -0.093 4.093 18 C -0.180 4.180 19 C 0.171 3.829 20 N -0.740 5.740 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.000 1.000 28 H -0.002 1.002 29 H 0.265 0.735 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 15.121 -5.608 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.117 4.117 5 C -0.188 4.188 6 C -0.099 4.099 7 C -0.118 4.118 8 C 0.028 3.972 9 C -0.564 4.564 10 H 0.070 0.930 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.789 3.211 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.112 4.112 18 C -0.202 4.202 19 C 0.068 3.932 20 N -0.375 5.375 21 H 0.102 0.898 22 H 0.089 0.911 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.994 15.154 -5.474 18.961 hybrid contribution 0.002 -1.171 -0.058 1.173 sum -9.993 13.983 -5.533 18.055 Atomic orbital electron populations 1.22203 0.93879 1.01891 1.03529 1.21446 0.94699 0.95757 0.83955 0.88930 1.21199 0.98819 0.93855 0.97778 1.20121 1.04846 0.99962 0.93902 1.20243 0.96956 0.93652 0.99093 1.20061 1.00709 0.96761 0.94291 1.17958 0.93950 0.91390 0.93884 1.21436 0.96749 0.99231 1.39022 0.93043 1.25941 0.96681 1.01724 0.95142 1.70090 1.15620 1.29502 1.42021 0.85450 0.78959 0.78698 0.77973 1.19627 1.20331 1.19150 1.20736 0.98982 0.97588 0.93881 1.20415 1.03591 0.96553 0.99661 1.18332 0.92501 0.89405 0.92926 1.44742 1.56318 1.28202 1.08218 0.89767 0.91143 0.93862 0.89039 0.89514 0.87523 0.98201 0.98343 0.92617 0.86761 0.84708 0.74364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.37 71.98 0.67 -1.76 16 2 C 0.15 2.83 4.32 45.24 0.20 3.03 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.08 -1.96 6.59 30.27 0.20 -1.76 16 5 C -0.18 -6.38 6.23 -19.63 -0.12 -6.51 16 6 C -0.08 -3.43 9.70 22.25 0.22 -3.21 16 7 C -0.12 -5.53 5.07 -19.85 -0.10 -5.63 16 8 C 0.07 3.69 5.11 29.10 0.15 3.84 16 9 C -0.53 -31.44 9.09 25.60 0.23 -31.20 16 10 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 13 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 C -0.09 -3.91 9.68 22.19 0.21 -3.70 16 18 C -0.18 -6.20 10.07 22.52 0.23 -5.98 16 19 C 0.17 5.52 7.03 38.34 0.27 5.79 16 20 N -0.74 -17.18 6.17 -317.38 -1.96 -19.14 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.01 7.71 -2.39 -0.02 1.99 16 26 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.00 -0.02 8.09 -2.39 -0.02 -0.04 16 28 H 0.00 -0.11 8.09 -2.38 -0.02 -0.13 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.42 7.53 8.96 -92.71 -0.83 6.70 16 Total: -1.00 -68.73 271.80 3.24 -65.49 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.27 Total: 10.04 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 2.62 Total: -46.46 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.67 Total: -76.66 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.73 3.24 -65.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.605 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds