Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38063 * 119.80946 * 2 1 4 4 C 1.38220 * 119.86792 * 179.97438 * 3 2 1 5 5 C 1.38075 * 119.82845 * 359.92248 * 4 3 2 6 6 C 1.38642 * 120.34803 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.85017 * 0.14720 * 6 5 4 8 8 C 1.50621 * 121.84779 * 179.71995 * 7 6 5 9 9 N 1.46629 * 110.48182 * 17.49696 * 8 7 6 10 10 C 1.47161 * 110.24632 * 307.44569 * 9 8 7 11 11 C 1.50716 * 118.48919 * 180.19474 * 6 5 4 12 12 H 1.09003 * 109.39335 * 76.57911 * 11 6 5 13 13 C 1.50703 * 109.31059 * 316.82389 * 11 6 5 14 14 H 1.07997 * 119.99863 * 359.54947 * 13 11 6 15 15 C 1.37878 * 120.00092 * 179.54793 * 13 11 6 16 16 N 1.31514 * 119.99603 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00157 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47174 * 89.99618 * 17 15 13 19 19 H 1.48500 * 109.47027 * 209.99773 * 17 15 13 20 20 H 1.48498 * 109.46917 * 329.99883 * 17 15 13 21 21 H 1.08990 * 109.47354 * 270.02074 * 1 2 3 22 22 H 1.09004 * 109.46938 * 30.02342 * 1 2 3 23 23 H 1.09001 * 109.46744 * 150.02183 * 1 2 3 24 24 H 1.08003 * 120.06769 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.08706 * 179.90326 * 4 3 2 26 26 H 1.08007 * 119.82848 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.29788 * 137.80869 * 8 7 6 28 28 H 1.09002 * 109.30186 * 257.38227 * 8 7 6 29 29 H 1.00897 * 110.99942 * 184.02990 * 9 8 7 30 30 H 1.08998 * 109.63098 * 311.58051 * 10 9 8 31 31 H 1.08997 * 109.62448 * 190.99606 * 10 9 8 32 32 H 0.97006 * 119.99614 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1979 0.0000 4 6 3.5755 1.1994 0.0005 5 6 4.2635 0.0022 0.0027 6 6 3.5753 -1.2013 0.0049 7 6 2.1965 -1.2033 0.0018 8 6 1.4037 -2.4840 -0.0023 9 7 2.2465 -3.6105 0.4105 10 6 3.4737 -3.6524 -0.4005 11 6 4.3683 -2.4829 0.0117 12 1 4.7587 -2.6617 1.0135 13 6 5.5153 -2.3644 -0.9585 14 1 5.6501 -1.4561 -1.5270 15 6 6.3928 -3.4156 -1.1204 16 7 7.3941 -3.3118 -1.9667 17 14 6.1593 -4.9869 -0.1377 18 1 5.2893 -5.9208 -0.8968 19 1 7.4800 -5.6231 0.0997 20 1 5.5231 -4.6660 1.1651 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6513 2.1321 0.0004 25 1 4.1160 2.1344 -0.0010 26 1 5.3436 0.0033 0.0035 27 1 0.5644 -2.3903 0.6869 28 1 1.0252 -2.6702 -1.0074 29 1 1.7417 -4.4819 0.3477 30 1 3.2181 -3.5635 -1.4564 31 1 3.9964 -4.5927 -0.2253 32 1 8.0112 -4.0515 -2.0809 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = 23.168362 kcal Electronic energy + Delta-G solvation = -14614.517811 eV Core-core repulsion = 12346.343747 eV Total energy + Delta-G solvation = -2268.174064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55232 -36.09523 -33.85352 -32.17594 -30.50186 -29.50777 -26.33621 -25.17775 -23.12168 -22.40053 -19.94481 -18.76158 -16.78572 -16.31938 -15.40359 -14.62168 -14.50469 -14.03526 -13.79410 -13.11636 -13.00417 -12.80327 -12.40337 -12.13780 -12.00209 -11.72170 -11.45606 -11.01911 -10.77215 -10.34184 -10.26374 -9.95412 -9.47998 -9.12543 -8.63439 -8.15758 -7.78360 -7.73662 -6.12840 -4.13304 1.98216 2.10342 3.21900 3.35450 3.39353 4.35427 4.38740 4.77447 5.21204 5.21887 5.30336 5.44834 5.65320 5.71251 5.76502 5.78848 5.89738 6.02445 6.07132 6.24507 6.30728 6.39202 6.61758 6.77120 6.83391 7.09167 7.12966 7.22203 7.37396 7.54233 7.69096 7.77725 7.92332 8.47673 8.91453 9.47660 10.99585 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.010883 C = 0.008830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.188098 B = 2572.166203 C = 3170.185877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.127 4.127 5 C -0.109 4.109 6 C -0.017 4.017 7 C -0.096 4.096 8 C 0.105 3.895 9 N -0.691 5.691 10 C 0.050 3.950 11 C 0.050 3.950 12 H 0.050 0.950 13 C -0.513 4.513 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.879 3.121 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.259 1.259 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.332 0.668 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 3.506 4.049 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.160 4.160 4 C -0.145 4.145 5 C -0.127 4.127 6 C -0.017 4.017 7 C -0.097 4.097 8 C -0.024 4.024 9 N -0.320 5.320 10 C -0.078 4.078 11 C 0.031 3.969 12 H 0.068 0.932 13 C -0.551 4.551 14 H 0.099 0.901 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.709 3.291 18 H -0.207 1.207 19 H -0.221 1.221 20 H -0.183 1.183 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.148 0.852 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.148 0.852 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.258 3.753 4.493 12.690 hybrid contribution -0.300 -1.227 -0.545 1.376 sum -11.558 2.526 3.948 12.472 Atomic orbital electron populations 1.20744 0.92187 1.02045 1.01627 1.19621 0.95174 0.92765 1.02106 1.20696 0.94312 0.96547 1.04447 1.21042 0.94131 0.97845 1.01501 1.21311 1.00875 0.91381 0.99093 1.19880 0.91921 0.96370 0.93540 1.19408 0.93584 0.93437 1.03235 1.20663 0.94536 0.89269 0.97962 1.60777 1.07827 1.05399 1.58032 1.22633 0.90053 1.00336 0.94761 1.18257 0.92739 0.87568 0.98358 0.93242 1.21069 1.08057 1.02952 1.23017 0.90131 1.25012 0.94828 0.98404 0.94785 1.69886 1.15541 1.32444 1.35537 0.86968 0.76618 0.83744 0.81811 1.20689 1.22135 1.18331 0.91728 0.92144 0.91966 0.87171 0.86927 0.85219 0.90513 0.94785 0.85199 0.94427 0.92199 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.19 36.01 0.33 -1.05 16 2 C -0.10 -1.61 5.89 -104.52 -0.62 -2.23 16 3 C -0.14 -2.32 9.69 -39.65 -0.38 -2.70 16 4 C -0.13 -2.24 10.05 -39.65 -0.40 -2.64 16 5 C -0.11 -2.27 8.74 -39.49 -0.35 -2.61 16 6 C -0.02 -0.37 5.43 -104.60 -0.57 -0.94 16 7 C -0.10 -1.86 5.79 -104.63 -0.61 -2.47 16 8 C 0.10 1.78 5.12 -5.16 -0.03 1.76 16 9 N -0.69 -12.86 6.88 -115.17 -0.79 -13.65 16 10 C 0.05 1.12 5.17 -3.73 -0.02 1.10 16 11 C 0.05 1.20 1.99 -92.97 -0.19 1.02 16 12 H 0.05 1.26 7.18 -51.93 -0.37 0.89 16 13 C -0.51 -14.21 8.36 -34.44 -0.29 -14.49 16 14 H 0.08 2.41 7.03 -52.49 -0.37 2.04 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 17 Si 0.88 21.49 24.28 -169.99 -4.13 17.36 16 18 H -0.28 -6.63 6.96 56.52 0.39 -6.24 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.16 6.50 56.52 0.37 -5.79 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 23 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 24 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 25 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.13 2.81 7.16 -52.48 -0.38 2.44 16 27 H 0.08 1.12 7.25 -51.93 -0.38 0.74 16 28 H 0.03 0.56 8.13 -51.93 -0.42 0.13 16 29 H 0.33 5.14 8.90 -39.29 -0.35 4.79 16 30 H 0.04 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.06 1.35 3.62 -51.93 -0.19 1.17 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 251.27 15.07 3.79 3.79 Total: -1.00 -30.18 251.27 -7.65 -37.83 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.09 Total: 4.20 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -3.20 Total: -23.32 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.02 Total: -39.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.13 Total: 17.36 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.18 -7.65 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.001 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds