Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38063 * 119.80946 * 2 1 4 4 C 1.38220 * 119.86792 * 179.97438 * 3 2 1 5 5 C 1.38075 * 119.82845 * 359.92248 * 4 3 2 6 6 C 1.38642 * 120.34803 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.85017 * 0.14720 * 6 5 4 8 8 C 1.50621 * 121.84779 * 179.71995 * 7 6 5 9 9 N 1.46629 * 110.48182 * 17.49696 * 8 7 6 10 10 C 1.47161 * 110.24632 * 307.44569 * 9 8 7 11 11 C 1.50716 * 118.48919 * 180.19474 * 6 5 4 12 12 H 1.09003 * 109.39335 * 76.57911 * 11 6 5 13 13 C 1.50703 * 109.31059 * 316.82389 * 11 6 5 14 14 H 1.07997 * 119.99863 * 359.54947 * 13 11 6 15 15 C 1.37878 * 120.00092 * 179.54793 * 13 11 6 16 16 N 1.31514 * 119.99603 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00157 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47174 * 89.99618 * 17 15 13 19 19 H 1.48500 * 109.47027 * 209.99773 * 17 15 13 20 20 H 1.48498 * 109.46917 * 329.99883 * 17 15 13 21 21 H 1.08990 * 109.47354 * 270.02074 * 1 2 3 22 22 H 1.09004 * 109.46938 * 30.02342 * 1 2 3 23 23 H 1.09001 * 109.46744 * 150.02183 * 1 2 3 24 24 H 1.08003 * 120.06769 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.08706 * 179.90326 * 4 3 2 26 26 H 1.08007 * 119.82848 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.29788 * 137.80869 * 8 7 6 28 28 H 1.09002 * 109.30186 * 257.38227 * 8 7 6 29 29 H 1.00897 * 110.99942 * 184.02990 * 9 8 7 30 30 H 1.08998 * 109.63098 * 311.58051 * 10 9 8 31 31 H 1.08997 * 109.62448 * 190.99606 * 10 9 8 32 32 H 0.97006 * 119.99614 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1979 0.0000 4 6 3.5755 1.1994 0.0005 5 6 4.2635 0.0022 0.0027 6 6 3.5753 -1.2013 0.0049 7 6 2.1965 -1.2033 0.0018 8 6 1.4037 -2.4840 -0.0023 9 7 2.2465 -3.6105 0.4105 10 6 3.4737 -3.6524 -0.4005 11 6 4.3683 -2.4829 0.0117 12 1 4.7587 -2.6617 1.0135 13 6 5.5153 -2.3644 -0.9585 14 1 5.6501 -1.4561 -1.5270 15 6 6.3928 -3.4156 -1.1204 16 7 7.3941 -3.3118 -1.9667 17 14 6.1593 -4.9869 -0.1377 18 1 5.2893 -5.9208 -0.8968 19 1 7.4800 -5.6231 0.0997 20 1 5.5231 -4.6660 1.1651 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6513 2.1321 0.0004 25 1 4.1160 2.1344 -0.0010 26 1 5.3436 0.0033 0.0035 27 1 0.5644 -2.3903 0.6869 28 1 1.0252 -2.6702 -1.0074 29 1 1.7417 -4.4819 0.3477 30 1 3.2181 -3.5635 -1.4564 31 1 3.9964 -4.5927 -0.2253 32 1 8.0112 -4.0515 -2.0809 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = 1.973311 kcal Electronic energy + Delta-G solvation = -14615.436898 eV Core-core repulsion = 12346.343747 eV Total energy + Delta-G solvation = -2269.093150 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02381 -37.62618 -35.55060 -33.98988 -32.04728 -31.09497 -27.56851 -26.98979 -24.72027 -24.06681 -21.42308 -20.35916 -18.87310 -17.86544 -16.86417 -16.37316 -16.09919 -15.53583 -15.25382 -14.91153 -14.49774 -14.23083 -13.94434 -13.51579 -13.35663 -13.21211 -12.94036 -12.64728 -12.47943 -12.12529 -11.89185 -11.69442 -11.22477 -11.08477 -10.75980 -9.63618 -9.26080 -9.19306 -8.33592 -6.38408 0.56110 0.64676 1.25166 1.34210 1.45272 2.28408 2.92283 3.00248 3.38286 3.86191 4.00832 4.14850 4.22691 4.42072 4.47023 4.51336 4.56508 4.61172 4.76172 4.88898 4.93727 5.04166 5.09036 5.26101 5.35043 5.43413 5.47572 5.72251 5.77053 5.88962 6.02361 6.23044 6.36353 6.57737 6.69324 7.25969 8.82541 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.010883 C = 0.008830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.188098 B = 2572.166203 C = 3170.185877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.057 4.057 7 C -0.112 4.112 8 C 0.104 3.896 9 N -0.691 5.691 10 C 0.060 3.940 11 C 0.051 3.949 12 H 0.030 0.970 13 C -0.513 4.513 14 H 0.039 0.961 15 C 0.015 3.985 16 N -0.945 5.945 17 Si 0.944 3.056 18 H -0.262 1.262 19 H -0.293 1.293 20 H -0.249 1.249 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.151 0.849 25 H 0.136 0.864 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.353 0.647 30 H 0.024 0.976 31 H 0.056 0.944 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 3.590 5.113 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.057 4.057 7 C -0.112 4.112 8 C -0.025 4.025 9 N -0.323 5.323 10 C -0.069 4.069 11 C 0.032 3.968 12 H 0.048 0.952 13 C -0.551 4.551 14 H 0.057 0.943 15 C -0.182 4.182 16 N -0.585 5.585 17 Si 0.771 3.229 18 H -0.187 1.187 19 H -0.221 1.221 20 H -0.174 1.174 21 H 0.102 0.898 22 H 0.100 0.900 23 H 0.090 0.910 24 H 0.168 0.832 25 H 0.154 0.846 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.172 0.828 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.848 3.836 5.563 16.313 hybrid contribution 0.763 -1.068 -0.895 1.588 sum -14.085 2.768 4.668 15.094 Atomic orbital electron populations 1.20836 0.88509 1.03693 1.03316 1.20153 0.97758 0.91712 0.99651 1.21191 0.93610 0.98313 1.02192 1.21312 0.95364 0.97349 1.00491 1.21226 0.99717 0.93067 1.01793 1.19865 0.93603 0.95393 0.96886 1.19758 0.92526 0.95877 1.03037 1.20837 0.94575 0.87450 0.99590 1.60649 1.07310 1.07272 1.57065 1.22269 0.91526 0.98714 0.94400 1.18073 0.92410 0.90359 0.95924 0.95232 1.21258 1.09679 1.01333 1.22877 0.94285 1.25855 0.94401 1.02074 0.95885 1.70032 1.16895 1.33810 1.37730 0.85913 0.76815 0.79527 0.80691 1.18729 1.22065 1.17367 0.89778 0.90002 0.90975 0.83157 0.84573 0.88316 0.87025 0.93568 0.82780 0.95767 0.92625 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.19 71.24 0.65 -1.45 16 2 C -0.09 -2.76 5.89 -19.80 -0.12 -2.88 16 3 C -0.14 -3.96 9.69 22.22 0.22 -3.75 16 4 C -0.13 -4.39 10.05 22.23 0.22 -4.17 16 5 C -0.14 -6.12 8.74 22.33 0.20 -5.92 16 6 C -0.06 -2.58 5.43 -19.85 -0.11 -2.69 16 7 C -0.11 -4.12 5.79 -19.87 -0.12 -4.23 16 8 C 0.10 3.19 5.12 85.58 0.44 3.63 16 9 N -0.69 -24.08 6.88 -518.28 -3.56 -27.64 16 10 C 0.06 2.63 5.17 86.22 0.45 3.07 16 11 C 0.05 2.57 1.99 -12.31 -0.02 2.54 16 12 H 0.03 1.57 7.18 -2.39 -0.02 1.55 16 13 C -0.51 -30.15 8.36 25.60 0.21 -29.93 16 14 H 0.04 2.54 7.03 -2.91 -0.02 2.52 16 15 C 0.02 0.91 5.45 84.65 0.46 1.37 16 16 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 17 Si 0.94 45.32 24.28 68.60 1.67 46.99 16 18 H -0.26 -11.71 6.96 99.48 0.69 -11.02 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.25 -11.50 6.50 99.48 0.65 -10.86 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.08 1.31 8.08 -2.38 -0.02 1.29 16 23 H 0.07 1.31 6.78 -2.39 -0.02 1.29 16 24 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 26 H 0.10 4.74 7.16 -2.91 -0.02 4.72 16 27 H 0.11 2.68 7.25 -2.38 -0.02 2.67 16 28 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.35 9.77 8.90 -89.70 -0.80 8.97 16 30 H 0.02 1.10 8.02 -2.39 -0.02 1.08 16 31 H 0.06 2.45 3.62 -2.39 -0.01 2.44 16 32 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -69.29 251.27 1.14 -68.16 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.25 Total: 16.14 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 2.48 Total: -44.40 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -3.26 Total: -86.89 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 46.99 kcal Total: -69.29 1.14 -68.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.129 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds