Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.70508 * 2 1 4 4 C 1.54632 * 110.79248 * 236.66723 * 2 1 3 5 5 C 1.51612 * 102.68150 * 267.08306 * 4 2 1 6 6 C 1.38017 * 131.58708 * 164.20304 * 5 4 2 7 7 C 1.38892 * 120.62608 * 180.17323 * 6 5 4 8 8 C 1.36483 * 120.34976 * 0.09191 * 7 6 5 9 9 C 1.40546 * 120.13377 * 359.89460 * 8 7 6 10 10 C 1.41045 * 120.19518 * 179.85768 * 9 8 7 11 11 H 1.07998 * 119.99733 * 145.11797 * 10 9 8 12 12 C 1.39926 * 119.99996 * 325.12444 * 10 9 8 13 13 N 1.30886 * 120.00089 * 349.81515 * 12 10 9 14 14 Si 1.86803 * 120.00108 * 169.81244 * 12 10 9 15 15 H 1.48504 * 109.46974 * 89.99753 * 14 12 10 16 16 H 1.48503 * 109.47447 * 209.99951 * 14 12 10 17 17 H 1.48501 * 109.47005 * 329.99994 * 14 12 10 18 18 C 1.38765 * 107.87614 * 344.16222 * 5 4 2 19 19 N 1.39509 * 111.26527 * 359.12105 * 18 5 4 20 20 C 1.46904 * 111.19486 * 140.28367 * 19 18 5 21 21 H 1.09000 * 109.47197 * 179.29953 * 1 2 3 22 22 H 1.09000 * 109.47419 * 59.29874 * 1 2 3 23 23 H 1.09001 * 109.46841 * 299.29880 * 1 2 3 24 24 H 1.08999 * 110.76973 * 25.38397 * 4 2 1 25 25 H 1.09007 * 110.76551 * 148.78775 * 4 2 1 26 26 H 1.08005 * 119.68550 * 0.18744 * 6 5 4 27 27 H 1.07992 * 119.82769 * 180.02562 * 7 6 5 28 28 H 1.08005 * 119.93251 * 179.88160 * 8 7 6 29 29 H 0.97001 * 119.99868 * 179.97438 * 13 12 10 30 30 H 1.09003 * 109.47145 * 309.17392 * 20 19 18 31 31 H 1.09003 * 109.46881 * 69.17169 * 20 19 18 32 32 H 1.08998 * 109.47249 * 189.17163 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 6 2.0789 -0.7944 -1.2078 5 6 2.2674 -2.1849 -0.6337 6 6 2.4525 -3.4098 -1.2421 7 6 2.6003 -4.5625 -0.4814 8 6 2.5623 -4.4990 0.8814 9 6 2.3753 -3.2638 1.5252 10 6 2.3328 -3.1971 2.9335 11 1 2.7415 -2.3387 3.4459 12 6 1.7613 -4.2430 3.6665 13 7 1.0913 -5.1839 3.0509 14 14 1.9548 -4.2966 5.5237 15 1 0.8288 -3.5666 6.1599 16 1 1.9503 -5.7094 5.9814 17 1 3.2389 -3.6564 5.9063 18 6 2.2301 -2.0832 0.7497 19 7 2.0552 -0.7599 1.1553 20 6 1.1415 -0.6723 2.3023 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3633 0.5029 0.8962 24 1 1.3553 -0.8075 -2.0229 25 1 3.0310 -0.3816 -1.5414 26 1 2.4831 -3.4726 -2.3199 27 1 2.7449 -5.5142 -0.9709 28 1 2.6760 -5.3998 1.4662 29 1 0.6955 -5.9091 3.5591 30 1 0.2282 -1.2252 2.0824 31 1 1.6217 -1.0993 3.1827 32 1 0.8967 0.3726 2.4928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260525809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 30.216248 kcal Electronic energy + Delta-G solvation = -14816.217806 eV Core-core repulsion = 12548.349362 eV Total energy + Delta-G solvation = -2267.868445 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67334 -35.88435 -33.72174 -31.52426 -29.79403 -28.73502 -26.11649 -25.32490 -23.83218 -20.81498 -20.10348 -19.13303 -16.91921 -15.51362 -14.99523 -14.72997 -14.48903 -13.95251 -13.22027 -12.72198 -12.56779 -12.03590 -11.97365 -11.68956 -11.52452 -11.14667 -11.04626 -10.96780 -10.87854 -10.53335 -10.43376 -10.16975 -9.65734 -9.31469 -9.11699 -8.63504 -7.21322 -6.72511 -6.45762 -4.24977 2.80226 2.93769 3.10814 3.15390 3.20765 3.99966 4.67646 4.82470 5.32299 5.41299 5.59797 5.72538 5.85144 6.04870 6.07944 6.25504 6.28647 6.36621 6.45863 6.48549 6.58729 6.75461 6.86826 6.94283 7.21947 7.24825 7.43472 7.61147 7.76114 8.08707 8.16675 8.24291 8.39707 8.70126 8.93935 9.02229 10.33184 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.012042 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149037 B = 2324.559785 C = 2974.186738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 H 0.083 0.917 4 C -0.074 4.074 5 C -0.123 4.123 6 C -0.194 4.194 7 C -0.125 4.125 8 C -0.135 4.135 9 C 0.113 3.887 10 C -0.466 4.466 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.811 5.811 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.008 4.008 19 N -0.463 5.463 20 C 0.019 3.981 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.277 0.723 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 5.236 -2.322 5.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.039 4.039 3 H 0.101 0.899 4 C -0.111 4.111 5 C -0.126 4.126 6 C -0.214 4.214 7 C -0.144 4.144 8 C -0.155 4.155 9 C 0.109 3.891 10 C -0.497 4.497 11 H 0.099 0.901 12 C -0.141 4.141 13 N -0.438 5.438 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.105 4.105 19 N -0.178 5.178 20 C -0.128 4.128 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.697 5.302 -2.054 5.729 hybrid contribution -0.765 -0.476 0.623 1.095 sum -1.461 4.826 -1.431 5.241 Atomic orbital electron populations 1.22293 0.96661 1.02416 1.01294 1.22730 0.93097 0.97794 0.90306 0.89862 1.21215 1.00003 0.93306 0.96571 1.20005 1.05538 0.93261 0.93825 1.19646 1.13117 0.91578 0.97014 1.20336 1.03375 0.96000 0.94658 1.20752 1.03871 0.98081 0.92776 1.17059 0.90526 0.88525 0.92975 1.19385 1.35093 1.03941 0.91258 0.90107 1.25803 0.93260 0.94457 1.00573 1.69808 1.25737 1.10402 1.37859 0.86387 0.79750 0.78190 0.82824 1.19677 1.20307 1.18598 1.19688 1.09323 0.89003 0.92474 1.60783 1.42457 1.09163 1.05427 1.22589 0.95598 0.98823 0.95784 0.92142 0.92713 0.92340 0.91896 0.91205 0.89540 0.89140 0.86777 0.91206 0.95070 0.89213 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 7.97 37.15 0.30 -2.46 16 2 C 0.07 1.24 3.86 -66.30 -0.26 0.98 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 4 C -0.07 -1.37 6.59 -26.58 -0.18 -1.55 16 5 C -0.12 -2.84 6.23 -104.06 -0.65 -3.49 16 6 C -0.19 -4.43 10.03 -39.42 -0.40 -4.82 16 7 C -0.12 -2.96 9.98 -39.97 -0.40 -3.36 16 8 C -0.13 -3.52 8.55 -39.34 -0.34 -3.86 16 9 C 0.11 3.02 5.46 -106.52 -0.58 2.44 16 10 C -0.47 -12.23 7.05 -37.89 -0.27 -12.50 16 11 H 0.08 2.09 6.24 -52.49 -0.33 1.76 16 12 C 0.07 1.87 5.22 -17.32 -0.09 1.78 16 13 N -0.81 -21.19 11.24 55.55 0.62 -20.56 16 14 Si 0.90 18.94 29.57 -169.99 -5.03 13.91 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 18 C -0.01 -0.19 5.84 -82.73 -0.48 -0.67 16 19 N -0.46 -10.12 5.28 -168.71 -0.89 -11.02 16 20 C 0.02 0.39 7.48 60.07 0.45 0.83 16 21 H 0.06 1.14 7.88 -51.93 -0.41 0.74 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 24 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 25 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 26 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.11 3.06 6.67 -52.48 -0.35 2.71 16 29 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 30 H 0.03 0.67 7.00 -51.93 -0.36 0.31 16 31 H 0.09 1.97 5.10 -51.93 -0.26 1.71 16 32 H 0.04 0.77 7.47 -51.93 -0.39 0.38 16 LS Contribution 255.43 15.07 3.85 3.85 Total: -1.00 -27.68 255.43 -8.44 -36.12 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.11 Total: 4.37 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.89 Total: -26.68 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: -0.27 Total: -31.58 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.68 -8.44 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.334 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds