Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.70508 * 2 1 4 4 C 1.54632 * 110.79248 * 236.66723 * 2 1 3 5 5 C 1.51612 * 102.68150 * 267.08306 * 4 2 1 6 6 C 1.38017 * 131.58708 * 164.20304 * 5 4 2 7 7 C 1.38892 * 120.62608 * 180.17323 * 6 5 4 8 8 C 1.36483 * 120.34976 * 0.09191 * 7 6 5 9 9 C 1.40546 * 120.13377 * 359.89460 * 8 7 6 10 10 C 1.41045 * 120.19518 * 179.85768 * 9 8 7 11 11 H 1.07998 * 119.99733 * 145.11797 * 10 9 8 12 12 C 1.39926 * 119.99996 * 325.12444 * 10 9 8 13 13 N 1.30886 * 120.00089 * 349.81515 * 12 10 9 14 14 Si 1.86803 * 120.00108 * 169.81244 * 12 10 9 15 15 H 1.48504 * 109.46974 * 89.99753 * 14 12 10 16 16 H 1.48503 * 109.47447 * 209.99951 * 14 12 10 17 17 H 1.48501 * 109.47005 * 329.99994 * 14 12 10 18 18 C 1.38765 * 107.87614 * 344.16222 * 5 4 2 19 19 N 1.39509 * 111.26527 * 359.12105 * 18 5 4 20 20 C 1.46904 * 111.19486 * 140.28367 * 19 18 5 21 21 H 1.09000 * 109.47197 * 179.29953 * 1 2 3 22 22 H 1.09000 * 109.47419 * 59.29874 * 1 2 3 23 23 H 1.09001 * 109.46841 * 299.29880 * 1 2 3 24 24 H 1.08999 * 110.76973 * 25.38397 * 4 2 1 25 25 H 1.09007 * 110.76551 * 148.78775 * 4 2 1 26 26 H 1.08005 * 119.68550 * 0.18744 * 6 5 4 27 27 H 1.07992 * 119.82769 * 180.02562 * 7 6 5 28 28 H 1.08005 * 119.93251 * 179.88160 * 8 7 6 29 29 H 0.97001 * 119.99868 * 179.97438 * 13 12 10 30 30 H 1.09003 * 109.47145 * 309.17392 * 20 19 18 31 31 H 1.09003 * 109.46881 * 69.17169 * 20 19 18 32 32 H 1.08998 * 109.47249 * 189.17163 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 6 2.0789 -0.7944 -1.2078 5 6 2.2674 -2.1849 -0.6337 6 6 2.4525 -3.4098 -1.2421 7 6 2.6003 -4.5625 -0.4814 8 6 2.5623 -4.4990 0.8814 9 6 2.3753 -3.2638 1.5252 10 6 2.3328 -3.1971 2.9335 11 1 2.7415 -2.3387 3.4459 12 6 1.7613 -4.2430 3.6665 13 7 1.0913 -5.1839 3.0509 14 14 1.9548 -4.2966 5.5237 15 1 0.8288 -3.5666 6.1599 16 1 1.9503 -5.7094 5.9814 17 1 3.2389 -3.6564 5.9063 18 6 2.2301 -2.0832 0.7497 19 7 2.0552 -0.7599 1.1553 20 6 1.1415 -0.6723 2.3023 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3633 0.5029 0.8962 24 1 1.3553 -0.8075 -2.0229 25 1 3.0310 -0.3816 -1.5414 26 1 2.4831 -3.4726 -2.3199 27 1 2.7449 -5.5142 -0.9709 28 1 2.6760 -5.3998 1.4662 29 1 0.6955 -5.9091 3.5591 30 1 0.2282 -1.2252 2.0824 31 1 1.6217 -1.0993 3.1827 32 1 0.8967 0.3726 2.4928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 14.422353 kcal Electronic energy + Delta-G solvation = -14816.902681 eV Core-core repulsion = 12548.349362 eV Total energy + Delta-G solvation = -2268.553319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34939 -37.65002 -35.57420 -33.22335 -31.41301 -30.52645 -27.89935 -26.93763 -25.56713 -22.53252 -21.89975 -20.78650 -18.79607 -17.30135 -16.70074 -16.36886 -16.05962 -15.71267 -14.82432 -14.48277 -14.27562 -13.69221 -13.52300 -13.39008 -13.17844 -12.80640 -12.73642 -12.55218 -12.52606 -12.12787 -12.05049 -11.71445 -11.49199 -11.14489 -10.98564 -10.37236 -9.10157 -8.59801 -8.25449 -6.21167 0.98144 1.07567 1.37925 1.47746 1.51466 2.23835 2.80058 3.20405 3.71557 3.88964 3.99029 4.20697 4.48267 4.49732 4.62877 4.73915 4.76896 4.80267 4.86807 4.93495 5.02825 5.08952 5.24053 5.34959 5.35965 5.40988 5.64738 5.81372 5.92930 6.17968 6.36121 6.39679 6.56565 6.80272 7.01342 7.12445 8.46828 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.012042 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149037 B = 2324.559785 C = 2974.186738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.065 3.935 3 H 0.114 0.886 4 C -0.068 4.068 5 C -0.138 4.138 6 C -0.194 4.194 7 C -0.134 4.134 8 C -0.160 4.160 9 C 0.075 3.925 10 C -0.488 4.488 11 H 0.075 0.925 12 C 0.033 3.967 13 N -0.846 5.846 14 Si 0.972 3.028 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.261 1.261 18 C -0.021 4.021 19 N -0.476 5.476 20 C 0.029 3.971 21 H 0.026 0.974 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.282 0.718 30 H 0.010 0.990 31 H 0.068 0.932 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 7.114 -3.105 7.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.041 4.041 3 H 0.132 0.868 4 C -0.105 4.105 5 C -0.140 4.140 6 C -0.213 4.213 7 C -0.153 4.153 8 C -0.181 4.181 9 C 0.071 3.929 10 C -0.519 4.519 11 H 0.093 0.907 12 C -0.178 4.178 13 N -0.474 5.474 14 Si 0.794 3.206 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.185 1.185 18 C -0.118 4.118 19 N -0.192 5.192 20 C -0.118 4.118 21 H 0.045 0.955 22 H 0.106 0.894 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.954 7.195 -2.854 7.799 hybrid contribution -0.670 -0.998 0.738 1.411 sum -1.624 6.197 -2.116 6.746 Atomic orbital electron populations 1.22234 0.95386 1.00855 1.03453 1.22979 0.94212 0.98519 0.88402 0.86794 1.21320 1.01626 0.90304 0.97277 1.20616 1.04277 0.95493 0.93663 1.20046 1.11496 0.91222 0.98575 1.20620 1.03007 0.97706 0.93964 1.20718 1.05978 0.97508 0.93874 1.17439 0.91866 0.89767 0.93819 1.19489 1.36210 1.04539 0.91640 0.90737 1.26581 0.92458 0.93750 1.05036 1.69886 1.26706 1.11157 1.39656 0.85345 0.79729 0.78412 0.77099 1.18785 1.19578 1.18488 1.19988 1.08691 0.89762 0.93395 1.60735 1.43395 1.07920 1.07145 1.22460 0.94149 1.00460 0.94733 0.95485 0.89371 0.91404 0.89460 0.89512 0.86451 0.86986 0.88808 0.90797 0.97093 0.91323 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 7.97 71.98 0.57 -4.22 16 2 C 0.07 2.15 3.86 45.27 0.17 2.33 16 3 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 4 C -0.07 -2.30 6.59 30.69 0.20 -2.10 16 5 C -0.14 -6.13 6.23 -19.50 -0.12 -6.25 16 6 C -0.19 -8.60 10.03 22.37 0.22 -8.38 16 7 C -0.13 -6.42 9.98 22.02 0.22 -6.20 16 8 C -0.16 -8.73 8.55 22.42 0.19 -8.53 16 9 C 0.07 4.13 5.46 -21.10 -0.12 4.02 16 10 C -0.49 -26.60 7.05 23.37 0.16 -26.43 16 11 H 0.07 4.01 6.24 -2.91 -0.02 3.99 16 12 C 0.03 1.74 5.22 85.24 0.45 2.18 16 13 N -0.85 -45.90 11.24 21.83 0.25 -45.65 16 14 Si 0.97 39.71 29.57 68.60 2.03 41.74 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 C -0.02 -1.03 5.84 38.98 0.23 -0.80 16 19 N -0.48 -20.28 5.28 -687.66 -3.63 -23.91 16 20 C 0.03 1.17 7.48 127.69 0.96 2.12 16 21 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.87 6.66 -2.39 -0.02 1.85 16 24 H 0.09 2.54 7.92 -2.39 -0.02 2.52 16 25 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 26 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.09 5.34 6.67 -2.91 -0.02 5.32 16 29 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 30 H 0.01 0.46 7.00 -2.39 -0.02 0.44 16 31 H 0.07 3.07 5.10 -2.39 -0.01 3.05 16 32 H 0.08 2.61 7.47 -2.39 -0.02 2.59 16 Total: -1.00 -61.53 255.43 2.89 -58.64 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.11 Total: 21.44 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 3.14 Total: -52.26 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -3.39 Total: -69.56 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -61.53 2.89 -58.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.058 kcal (2) G-P(sol) polarization free energy of solvation -61.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds