Wall clock time and date at job start Mon Mar 30 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.85478 * 2 1 4 4 C 1.54625 * 110.79636 * 123.44141 * 2 1 3 5 5 C 1.51616 * 102.68422 * 92.92454 * 4 2 1 6 6 C 1.38023 * 131.58671 * 196.13940 * 5 4 2 7 7 C 1.38894 * 120.62234 * 179.32998 * 6 5 4 8 8 C 1.36481 * 120.35385 * 359.93275 * 7 6 5 9 9 C 1.40546 * 120.13052 * 0.11142 * 8 7 6 10 10 C 1.41045 * 120.19437 * 180.16427 * 9 8 7 11 11 H 1.08000 * 119.99829 * 154.88837 * 10 9 8 12 12 C 1.39921 * 119.99872 * 334.88649 * 10 9 8 13 13 N 1.30879 * 120.00358 * 342.17647 * 12 10 9 14 14 Si 1.86800 * 119.99790 * 162.17868 * 12 10 9 15 15 H 1.48494 * 109.47443 * 94.64863 * 14 12 10 16 16 H 1.48503 * 109.47162 * 214.64797 * 14 12 10 17 17 H 1.48497 * 109.47469 * 334.64484 * 14 12 10 18 18 C 1.38751 * 107.87517 * 15.78659 * 5 4 2 19 19 N 1.39026 * 111.20992 * 0.93034 * 18 5 4 20 20 C 1.46895 * 111.00262 * 103.39682 * 19 18 5 21 21 H 1.09003 * 109.47018 * 183.44434 * 1 2 3 22 22 H 1.09007 * 109.46693 * 303.43382 * 1 2 3 23 23 H 1.08995 * 109.47136 * 63.43865 * 1 2 3 24 24 H 1.09004 * 110.77328 * 334.62167 * 4 2 1 25 25 H 1.09000 * 110.92938 * 211.29586 * 4 2 1 26 26 H 1.08002 * 119.68964 * 359.31647 * 6 5 4 27 27 H 1.07990 * 119.82318 * 179.97438 * 7 6 5 28 28 H 1.07993 * 119.93691 * 180.02562 * 8 7 6 29 29 H 0.96995 * 120.00447 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.47055 * 59.87820 * 20 19 18 31 31 H 1.08995 * 109.47333 * 299.87751 * 20 19 18 32 32 H 1.08998 * 109.47074 * 179.87596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0790 -0.7966 1.2062 5 6 2.2678 -2.1860 0.6295 6 6 2.4470 -3.4130 1.2357 7 6 2.5862 -4.5654 0.4729 8 6 2.5462 -4.4995 -0.8897 9 6 2.3657 -3.2621 -1.5313 10 6 2.3206 -3.1930 -2.9393 11 1 1.7999 -2.3802 -3.4237 12 6 2.9505 -4.1775 -3.7086 13 7 3.8576 -4.9503 -3.1673 14 14 2.4968 -4.3889 -5.5083 15 1 3.4435 -3.6157 -6.3516 16 1 2.5710 -5.8268 -5.8719 17 1 1.1154 -3.8923 -5.7323 18 6 2.2294 -2.0819 -0.7536 19 7 2.0552 -0.7620 -1.1540 20 6 3.3185 -0.1863 -1.6340 21 1 -0.3633 -1.0258 0.0617 22 1 -0.3633 0.5663 0.8577 23 1 -0.3633 0.4595 -0.9192 24 1 1.3555 -0.8114 2.0213 25 1 3.0305 -0.3857 1.5436 26 1 2.4795 -3.4776 2.3132 27 1 2.7263 -5.5186 0.9606 28 1 2.6547 -5.3998 -1.4762 29 1 4.2945 -5.6325 -3.7007 30 1 3.6826 -0.7656 -2.4825 31 1 4.0571 -0.2120 -0.8328 32 1 3.1533 0.8459 -1.9428 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:17 Heat of formation + Delta-G solvation = 12.186540 kcal Electronic energy + Delta-G solvation = -14692.177446 eV Core-core repulsion = 12423.527174 eV Total energy + Delta-G solvation = -2268.650272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29106 -37.64566 -35.45496 -33.14321 -31.16911 -30.78536 -27.55061 -27.16468 -25.66984 -22.51062 -21.83600 -20.92029 -18.75747 -17.29512 -16.63172 -16.33426 -15.89105 -15.70475 -14.78401 -14.44181 -14.13548 -13.89456 -13.58612 -13.44266 -13.21070 -12.90640 -12.70957 -12.55136 -12.37590 -12.16805 -12.00622 -11.71978 -11.48981 -11.31635 -10.98908 -9.89510 -9.21194 -8.72205 -8.37679 -6.22751 0.96452 1.06086 1.37631 1.48424 1.54362 2.22170 2.73808 3.15292 3.68764 3.90183 4.08886 4.25475 4.49267 4.54623 4.64983 4.67105 4.74101 4.86514 4.94168 5.00486 5.07087 5.09272 5.18281 5.33987 5.38571 5.53446 5.64105 5.87407 5.95752 6.19288 6.38247 6.46922 6.53122 6.82694 6.99112 7.18097 8.35875 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.011219 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.298168 B = 2495.205835 C = 3037.016804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.072 3.928 3 H 0.105 0.895 4 C -0.094 4.094 5 C -0.128 4.128 6 C -0.217 4.217 7 C -0.120 4.120 8 C -0.181 4.181 9 C 0.091 3.909 10 C -0.475 4.475 11 H 0.070 0.930 12 C 0.035 3.965 13 N -0.827 5.827 14 Si 0.976 3.024 15 H -0.263 1.263 16 H -0.266 1.266 17 H -0.262 1.262 18 C -0.039 4.039 19 N -0.491 5.491 20 C 0.040 3.960 21 H 0.029 0.971 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.286 0.714 30 H 0.045 0.955 31 H 0.015 0.985 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 6.697 3.262 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.035 4.035 3 H 0.123 0.877 4 C -0.132 4.132 5 C -0.131 4.131 6 C -0.237 4.237 7 C -0.138 4.138 8 C -0.201 4.201 9 C 0.087 3.913 10 C -0.505 4.505 11 H 0.089 0.911 12 C -0.179 4.179 13 N -0.454 5.454 14 Si 0.797 3.203 15 H -0.188 1.188 16 H -0.190 1.190 17 H -0.186 1.186 18 C -0.136 4.136 19 N -0.209 5.209 20 C -0.106 4.106 21 H 0.048 0.952 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.663 6.593 2.752 7.624 hybrid contribution 0.700 -0.712 -0.228 1.024 sum -1.963 5.881 2.524 6.694 Atomic orbital electron populations 1.21617 0.93147 1.00954 1.02460 1.22760 0.96792 0.97078 0.86871 0.87715 1.21677 1.01457 0.91191 0.98892 1.21048 1.01854 0.95481 0.94723 1.19971 1.13799 0.91617 0.98291 1.20627 1.01553 0.97651 0.93989 1.20854 1.08092 0.97317 0.93863 1.17479 0.90580 0.89585 0.93634 1.19555 1.30403 1.08878 0.91672 0.91144 1.26713 0.92363 0.93634 1.05219 1.69903 1.18303 1.16982 1.40179 0.85284 0.79757 0.78561 0.76666 1.18796 1.19038 1.18613 1.19479 1.12093 0.89736 0.92249 1.59637 1.26776 1.00142 1.34323 1.22267 0.89745 0.99704 0.98913 0.95151 0.89492 0.92168 0.89071 0.90635 0.87067 0.87090 0.87899 0.90306 0.93640 0.96657 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 9.49 71.98 0.68 -3.03 16 2 C 0.07 2.39 3.32 45.27 0.15 2.54 16 3 H 0.10 2.83 7.76 -2.39 -0.02 2.82 16 4 C -0.09 -3.24 6.52 30.69 0.20 -3.04 16 5 C -0.13 -5.80 6.23 -19.50 -0.12 -5.92 16 6 C -0.22 -9.83 10.03 22.38 0.22 -9.61 16 7 C -0.12 -5.79 9.98 22.02 0.22 -5.57 16 8 C -0.18 -9.90 8.62 22.42 0.19 -9.70 16 9 C 0.09 5.07 5.59 -21.10 -0.12 4.95 16 10 C -0.48 -26.45 8.63 23.37 0.20 -26.25 16 11 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 12 C 0.03 1.81 5.13 85.24 0.44 2.25 16 13 N -0.83 -44.22 10.98 21.83 0.24 -43.98 16 14 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 16 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 C -0.04 -1.95 5.30 39.06 0.21 -1.74 16 19 N -0.49 -20.97 4.91 -688.17 -3.38 -24.34 16 20 C 0.04 1.57 9.28 127.69 1.18 2.75 16 21 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.09 2.71 7.92 -2.38 -0.02 2.69 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 26 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 27 H 0.11 4.72 8.06 -2.92 -0.02 4.69 16 28 H 0.10 5.84 6.17 -2.91 -0.02 5.82 16 29 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 30 H 0.04 2.02 7.79 -2.38 -0.02 2.00 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 Total: -1.00 -61.76 265.70 3.45 -58.31 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.09 Total: 20.71 kcal Atomic # 6 Polarization: -55.83 SS G_CDS: 3.46 Total: -52.37 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -3.14 Total: -68.32 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -61.76 3.45 -58.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.501 kcal (2) G-P(sol) polarization free energy of solvation -61.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds