Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.68386 * 2 1 4 4 C 1.54630 * 110.77124 * 123.26326 * 2 1 3 5 5 N 1.47912 * 102.55117 * 143.85307 * 4 2 1 6 6 C 1.46902 * 110.99861 * 94.68541 * 5 4 2 7 7 C 1.39020 * 108.01181 * 332.78635 * 5 4 2 8 8 C 1.38803 * 111.19776 * 18.37945 * 7 5 4 9 9 C 1.37981 * 120.53567 * 179.29458 * 8 7 5 10 10 C 1.38938 * 120.61797 * 0.19409 * 9 8 7 11 11 C 1.36444 * 120.35899 * 359.78046 * 10 9 8 12 12 C 1.40575 * 120.12865 * 0.43866 * 11 10 9 13 13 C 1.41041 * 120.19776 * 179.64711 * 12 11 10 14 14 H 1.07994 * 120.00538 * 205.52590 * 13 12 11 15 15 C 1.39937 * 119.99791 * 25.24341 * 13 12 11 16 16 N 1.30878 * 119.99945 * 17.54165 * 15 13 12 17 17 Si 1.86792 * 119.99893 * 197.53999 * 15 13 12 18 18 H 1.48506 * 109.47422 * 60.00318 * 17 15 13 19 19 H 1.48507 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47551 * 299.99992 * 17 15 13 21 21 H 1.08995 * 109.47000 * 296.73019 * 1 2 3 22 22 H 1.08994 * 109.47057 * 56.73499 * 1 2 3 23 23 H 1.08999 * 109.46612 * 176.73255 * 1 2 3 24 24 H 1.09007 * 110.78888 * 25.59392 * 4 2 1 25 25 H 1.08994 * 110.80023 * 262.12215 * 4 2 1 26 26 H 1.08997 * 109.47068 * 299.98890 * 6 5 4 27 27 H 1.08997 * 109.46944 * 59.99145 * 6 5 4 28 28 H 1.09001 * 109.46785 * 179.97438 * 6 5 4 29 29 H 1.07994 * 119.69301 * 180.20953 * 9 8 7 30 30 H 1.08002 * 119.81952 * 180.02562 * 10 9 8 31 31 H 1.07999 * 119.93622 * 180.17250 * 11 10 9 32 32 H 0.96991 * 120.00149 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0784 -0.7930 1.2089 5 7 3.2825 -1.4432 0.6474 6 6 4.4852 -0.6427 0.9131 7 6 3.0849 -1.6070 -0.7189 8 6 2.0717 -0.7792 -1.1823 9 6 1.7250 -0.7757 -2.5179 10 6 2.3806 -1.6030 -3.4213 11 6 3.3816 -2.4287 -2.9994 12 6 3.7505 -2.4544 -1.6431 13 6 4.7799 -3.3128 -1.2041 14 1 4.8008 -3.6507 -0.1786 15 6 5.7710 -3.7314 -2.0989 16 7 5.9558 -3.0833 -3.2208 17 14 6.8303 -5.2152 -1.6921 18 1 5.9653 -6.4114 -1.5296 19 1 7.7972 -5.4504 -2.7944 20 1 7.5701 -4.9641 -0.4292 21 1 -0.3633 0.4622 0.9178 22 1 -0.3633 0.5637 -0.8592 23 1 -0.3632 -1.0260 -0.0586 24 1 1.3562 -1.5383 1.5425 25 1 2.3462 -0.1204 2.0237 26 1 4.3748 0.3412 0.4573 27 1 4.6175 -0.5319 1.9893 28 1 5.3559 -1.1438 0.4899 29 1 0.9369 -0.1237 -2.8643 30 1 2.0991 -1.5895 -4.4639 31 1 3.8885 -3.0669 -3.7080 32 1 6.6425 -3.3736 -3.8412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260532507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 26.734460 kcal Electronic energy + Delta-G solvation = -14639.736352 eV Core-core repulsion = 12371.716926 eV Total energy + Delta-G solvation = -2268.019426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57833 -35.73192 -33.68424 -32.41663 -29.19839 -28.23890 -26.50905 -25.09354 -23.53626 -21.54984 -19.69000 -19.31245 -16.83675 -15.54978 -15.08707 -14.49732 -14.36323 -13.91396 -13.36957 -12.79818 -12.58013 -12.31888 -11.84229 -11.80688 -11.58402 -11.19576 -11.03391 -10.87835 -10.77875 -10.67739 -10.40693 -10.22936 -9.63322 -9.43216 -9.11176 -8.14643 -7.30620 -6.86561 -6.56785 -4.25449 2.80446 2.93219 3.09376 3.13174 3.26026 3.97288 4.62910 4.83921 5.30683 5.44052 5.61767 5.69656 5.90773 5.94204 6.11701 6.18358 6.26299 6.35903 6.39897 6.51344 6.58482 6.69999 6.73384 7.09049 7.24837 7.29415 7.44892 7.67062 7.77581 8.10831 8.16183 8.31291 8.37840 8.73994 8.92924 9.07214 10.22134 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.010459 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.298977 B = 2676.425625 C = 3214.755882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 H 0.067 0.933 4 C 0.055 3.945 5 N -0.476 5.476 6 C 0.033 3.967 7 C -0.033 4.033 8 C -0.108 4.108 9 C -0.210 4.210 10 C -0.113 4.113 11 C -0.152 4.152 12 C 0.128 3.872 13 C -0.447 4.447 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.797 5.797 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.266 1.266 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 2.784 3.997 6.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.072 4.072 5 N -0.193 5.193 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.111 4.111 9 C -0.230 4.230 10 C -0.132 4.132 11 C -0.172 4.172 12 C 0.124 3.876 13 C -0.477 4.477 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.422 5.422 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.190 1.190 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.245 2.301 4.080 5.699 hybrid contribution 0.446 0.209 -0.349 0.603 sum -2.800 2.510 3.731 5.297 Atomic orbital electron populations 1.21606 0.94805 1.01749 1.00495 1.21186 0.95687 0.98418 0.94683 0.91460 1.23124 0.92572 0.95949 0.95590 1.59690 1.02104 1.45063 1.12463 1.22358 0.94606 0.95283 0.99140 1.19224 1.03810 1.01753 0.88133 1.20407 0.99751 0.97522 0.93383 1.19560 1.05158 1.06385 0.91922 1.20354 0.97563 0.98254 0.96989 1.20888 0.98127 1.01899 0.96308 1.17069 0.91248 0.89193 0.90077 1.19475 1.06659 1.23912 0.97626 0.89923 1.25952 0.97470 0.96690 0.94262 1.69843 1.28338 1.35039 1.09016 0.86381 0.79389 0.82105 0.78921 1.18854 1.20500 1.19030 0.93390 0.93048 0.92544 0.90551 0.91629 0.96604 0.93069 0.90595 0.89858 0.89247 0.86147 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.13 37.16 0.34 -1.66 16 2 C -0.08 -1.50 3.61 -90.47 -0.33 -1.82 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.06 1.01 6.54 -2.41 -0.02 0.99 16 5 N -0.48 -10.53 5.23 -176.36 -0.92 -11.45 16 6 C 0.03 0.66 9.28 60.07 0.56 1.22 16 7 C -0.03 -0.83 5.35 -82.97 -0.44 -1.27 16 8 C -0.11 -2.49 5.67 -104.06 -0.59 -3.08 16 9 C -0.21 -4.85 9.89 -39.42 -0.39 -5.24 16 10 C -0.11 -2.70 9.98 -39.97 -0.40 -3.10 16 11 C -0.15 -4.00 8.62 -39.35 -0.34 -4.34 16 12 C 0.13 3.45 5.59 -106.53 -0.60 2.86 16 13 C -0.45 -11.96 8.60 -37.88 -0.33 -12.29 16 14 H 0.08 2.21 7.90 -52.49 -0.41 1.79 16 15 C 0.07 1.85 5.13 -17.32 -0.09 1.76 16 16 N -0.80 -20.59 10.98 55.55 0.61 -19.98 16 17 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 25 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.08 1.67 7.75 -51.93 -0.40 1.27 16 29 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 32 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -27.78 265.23 -8.43 -36.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.47 Total: 3.26 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.62 Total: -25.98 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: -0.31 Total: -31.42 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.78 -8.43 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.950 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds