Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.68386 * 2 1 4 4 C 1.54630 * 110.77124 * 123.26326 * 2 1 3 5 5 N 1.47912 * 102.55117 * 143.85307 * 4 2 1 6 6 C 1.46902 * 110.99861 * 94.68541 * 5 4 2 7 7 C 1.39020 * 108.01181 * 332.78635 * 5 4 2 8 8 C 1.38803 * 111.19776 * 18.37945 * 7 5 4 9 9 C 1.37981 * 120.53567 * 179.29458 * 8 7 5 10 10 C 1.38938 * 120.61797 * 0.19409 * 9 8 7 11 11 C 1.36444 * 120.35899 * 359.78046 * 10 9 8 12 12 C 1.40575 * 120.12865 * 0.43866 * 11 10 9 13 13 C 1.41041 * 120.19776 * 179.64711 * 12 11 10 14 14 H 1.07994 * 120.00538 * 205.52590 * 13 12 11 15 15 C 1.39937 * 119.99791 * 25.24341 * 13 12 11 16 16 N 1.30878 * 119.99945 * 17.54165 * 15 13 12 17 17 Si 1.86792 * 119.99893 * 197.53999 * 15 13 12 18 18 H 1.48506 * 109.47422 * 60.00318 * 17 15 13 19 19 H 1.48507 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47551 * 299.99992 * 17 15 13 21 21 H 1.08995 * 109.47000 * 296.73019 * 1 2 3 22 22 H 1.08994 * 109.47057 * 56.73499 * 1 2 3 23 23 H 1.08999 * 109.46612 * 176.73255 * 1 2 3 24 24 H 1.09007 * 110.78888 * 25.59392 * 4 2 1 25 25 H 1.08994 * 110.80023 * 262.12215 * 4 2 1 26 26 H 1.08997 * 109.47068 * 299.98890 * 6 5 4 27 27 H 1.08997 * 109.46944 * 59.99145 * 6 5 4 28 28 H 1.09001 * 109.46785 * 179.97438 * 6 5 4 29 29 H 1.07994 * 119.69301 * 180.20953 * 9 8 7 30 30 H 1.08002 * 119.81952 * 180.02562 * 10 9 8 31 31 H 1.07999 * 119.93622 * 180.17250 * 11 10 9 32 32 H 0.96991 * 120.00149 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0784 -0.7930 1.2089 5 7 3.2825 -1.4432 0.6474 6 6 4.4852 -0.6427 0.9131 7 6 3.0849 -1.6070 -0.7189 8 6 2.0717 -0.7792 -1.1823 9 6 1.7250 -0.7757 -2.5179 10 6 2.3806 -1.6030 -3.4213 11 6 3.3816 -2.4287 -2.9994 12 6 3.7505 -2.4544 -1.6431 13 6 4.7799 -3.3128 -1.2041 14 1 4.8008 -3.6507 -0.1786 15 6 5.7710 -3.7314 -2.0989 16 7 5.9558 -3.0833 -3.2208 17 14 6.8303 -5.2152 -1.6921 18 1 5.9653 -6.4114 -1.5296 19 1 7.7972 -5.4504 -2.7944 20 1 7.5701 -4.9641 -0.4292 21 1 -0.3633 0.4622 0.9178 22 1 -0.3633 0.5637 -0.8592 23 1 -0.3632 -1.0260 -0.0586 24 1 1.3562 -1.5383 1.5425 25 1 2.3462 -0.1204 2.0237 26 1 4.3748 0.3412 0.4573 27 1 4.6175 -0.5319 1.9893 28 1 5.3559 -1.1438 0.4899 29 1 0.9369 -0.1237 -2.8643 30 1 2.0991 -1.5895 -4.4639 31 1 3.8885 -3.0669 -3.7080 32 1 6.6425 -3.3736 -3.8412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260532507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 11.201256 kcal Electronic energy + Delta-G solvation = -14640.409923 eV Core-core repulsion = 12371.716926 eV Total energy + Delta-G solvation = -2268.692997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27309 -37.53484 -35.51605 -34.00861 -31.05393 -29.97815 -28.06845 -26.89593 -25.13356 -23.27736 -21.49816 -21.00772 -18.69238 -17.33556 -16.81272 -16.16426 -16.05482 -15.61013 -14.91740 -14.48369 -14.24666 -13.91708 -13.46626 -13.36302 -13.27506 -12.81215 -12.69660 -12.58790 -12.40496 -12.29883 -12.03156 -11.78096 -11.43974 -11.19330 -10.99479 -9.89268 -9.21844 -8.72071 -8.37819 -6.23549 0.96607 1.06242 1.37496 1.48195 1.54086 2.22019 2.73974 3.21934 3.68108 3.84445 4.14129 4.18957 4.46044 4.55749 4.62917 4.64763 4.69144 4.81626 4.94743 4.99292 5.04817 5.11758 5.18866 5.35080 5.40085 5.50369 5.62362 5.87593 5.93707 6.19401 6.37252 6.45096 6.50583 6.81743 6.98515 7.17020 8.35835 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.010459 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.298977 B = 2676.425625 C = 3214.755882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.077 0.923 4 C 0.056 3.944 5 N -0.497 5.497 6 C 0.040 3.960 7 C -0.047 4.047 8 C -0.120 4.120 9 C -0.211 4.211 10 C -0.120 4.120 11 C -0.179 4.179 12 C 0.091 3.909 13 C -0.477 4.477 14 H 0.070 0.930 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.261 1.261 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.015 0.985 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 3.660 5.280 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.095 0.905 4 C -0.071 4.071 5 N -0.215 5.215 6 C -0.106 4.106 7 C -0.144 4.144 8 C -0.122 4.122 9 C -0.231 4.231 10 C -0.139 4.139 11 C -0.200 4.200 12 C 0.088 3.912 13 C -0.507 4.507 14 H 0.088 0.912 15 C -0.180 4.180 16 N -0.454 5.454 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.186 1.186 21 H 0.099 0.901 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.033 0.967 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.179 3.193 5.368 7.515 hybrid contribution 0.648 0.029 -0.725 0.973 sum -3.531 3.221 4.643 6.663 Atomic orbital electron populations 1.21563 0.92174 1.01638 1.02572 1.21261 0.97806 0.98059 0.92383 0.90466 1.23285 0.91062 0.96484 0.96235 1.59623 1.04134 1.46631 1.11070 1.22287 0.92861 0.94313 1.01163 1.19532 1.03869 1.01464 0.89493 1.21016 0.99121 0.97371 0.94710 1.19926 1.05195 1.05940 0.92036 1.20647 0.96900 0.97794 0.98512 1.20856 0.99625 1.03282 0.96193 1.17467 0.92289 0.90344 0.91108 1.19534 1.07970 1.25651 0.97528 0.91173 1.26721 0.98331 0.99012 0.93913 1.69893 1.29197 1.36333 1.09929 0.85329 0.77684 0.78124 0.79030 1.18771 1.19129 1.18566 0.90069 0.92453 0.93561 0.89999 0.88277 0.96669 0.89428 0.93671 0.87104 0.87042 0.87865 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 9.13 71.98 0.66 -2.66 16 2 C -0.08 -2.59 3.61 -10.69 -0.04 -2.63 16 3 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.06 1.88 6.54 86.66 0.57 2.45 16 5 N -0.50 -21.54 5.23 -711.87 -3.72 -25.26 16 6 C 0.04 1.58 9.28 127.69 1.18 2.77 16 7 C -0.05 -2.37 5.35 39.06 0.21 -2.16 16 8 C -0.12 -5.37 5.67 -19.50 -0.11 -5.48 16 9 C -0.21 -9.48 9.89 22.38 0.22 -9.26 16 10 C -0.12 -5.77 9.98 22.02 0.22 -5.55 16 11 C -0.18 -9.79 8.62 22.42 0.19 -9.59 16 12 C 0.09 5.11 5.59 -21.10 -0.12 5.00 16 13 C -0.48 -26.61 8.60 23.37 0.20 -26.41 16 14 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 15 C 0.03 1.79 5.13 85.25 0.44 2.23 16 16 N -0.83 -44.23 10.98 21.83 0.24 -43.99 16 17 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 2.64 7.92 -2.38 -0.02 2.62 16 25 H 0.10 2.65 7.76 -2.39 -0.02 2.63 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 28 H 0.04 2.02 7.75 -2.39 -0.02 2.01 16 29 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 31 H 0.10 5.85 6.17 -2.91 -0.02 5.83 16 32 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -61.70 265.23 3.26 -58.44 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.09 Total: 20.41 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 3.62 Total: -51.32 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -3.48 Total: -69.25 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -61.70 3.26 -58.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds