Wall clock time and date at job start Mon Mar 30 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.34357 * 2 1 4 4 C 1.53747 * 110.29938 * 122.11687 * 2 1 3 5 5 C 1.51223 * 104.54272 * 118.92978 * 4 2 1 6 6 C 1.38642 * 108.52935 * 0.02562 * 5 4 2 7 7 C 1.39629 * 119.02566 * 180.02562 * 6 5 4 8 8 C 1.37869 * 120.28452 * 0.02562 * 7 6 5 9 9 C 1.38263 * 120.22864 * 359.97438 * 8 7 6 10 10 C 1.38121 * 130.99338 * 180.02562 * 5 4 2 11 11 C 1.50694 * 119.92792 * 0.02562 * 10 5 4 12 12 C 1.50693 * 109.47601 * 84.97624 * 11 10 5 13 13 H 1.07996 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47456 * 89.99550 * 16 14 12 18 18 H 1.48504 * 109.47274 * 210.00099 * 16 14 12 19 19 H 1.48501 * 109.47046 * 329.99578 * 16 14 12 20 20 N 1.39575 * 111.64896 * 0.02562 * 6 5 4 21 21 H 1.08996 * 109.47032 * 180.65505 * 1 2 3 22 22 H 1.08996 * 109.47261 * 300.66126 * 1 2 3 23 23 H 1.09001 * 109.46541 * 60.66134 * 1 2 3 24 24 H 1.09001 * 110.41941 * 0.16316 * 4 2 1 25 25 H 1.09002 * 110.42599 * 237.69301 * 4 2 1 26 26 H 1.08003 * 119.85762 * 179.97438 * 7 6 5 27 27 H 1.08000 * 119.88712 * 179.97438 * 8 7 6 28 28 H 1.07994 * 120.08052 * 180.27150 * 9 8 7 29 29 H 1.09005 * 109.47418 * 204.98108 * 11 10 5 30 30 H 1.09009 * 109.47083 * 324.97445 * 11 10 5 31 31 H 0.97001 * 120.00330 * 179.97438 * 15 14 12 32 32 H 0.96992 * 124.96062 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0634 -0.7666 1.2213 5 6 2.8592 -1.9104 0.6338 6 6 2.7999 -1.8241 -0.7487 7 6 3.4656 -2.7817 -1.5165 8 6 4.1699 -3.7966 -0.9044 9 6 4.2228 -3.8736 0.4751 10 6 3.5670 -2.9285 1.2424 11 6 3.6228 -3.0108 2.7461 12 6 2.4088 -3.7447 3.2544 13 1 1.6708 -4.1149 2.5583 14 6 2.2401 -3.9435 4.6083 15 7 3.1390 -3.4932 5.4561 16 14 0.7356 -4.8539 5.2384 17 1 1.0318 -6.3071 5.3139 18 1 0.3819 -4.3499 6.5898 19 1 -0.4033 -4.6283 4.3124 20 7 2.0397 -0.7298 -1.1641 21 1 -0.3633 -1.0276 0.0117 22 1 -0.3633 0.5240 0.8840 23 1 -0.3632 0.5035 -0.8959 24 1 1.2372 -1.1471 1.8220 25 1 2.7074 -0.1244 1.8221 26 1 3.4280 -2.7275 -2.5945 27 1 4.6822 -4.5341 -1.5045 28 1 4.7788 -4.6671 0.9521 29 1 4.5234 -3.5457 3.0475 30 1 3.6407 -2.0044 3.1646 31 1 3.0202 -3.6328 6.4086 32 1 1.8719 -0.4883 -2.0884 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260557312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:24 Heat of formation + Delta-G solvation = 15.327499 kcal Electronic energy + Delta-G solvation = -14248.382753 eV Core-core repulsion = 11979.868684 eV Total energy + Delta-G solvation = -2268.514069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81393 -36.24294 -33.44332 -31.68163 -30.45921 -29.06424 -26.85391 -25.71997 -23.08003 -20.85519 -20.74004 -19.93683 -16.47690 -16.21635 -15.34928 -14.99125 -14.51512 -14.37313 -13.64040 -12.81067 -12.70398 -12.31302 -12.19286 -11.83557 -11.62515 -11.37524 -11.21176 -11.01198 -10.89518 -10.64659 -10.42059 -10.25783 -9.67261 -9.32447 -9.24103 -8.37296 -7.64774 -6.74737 -5.99265 -4.02005 2.22655 2.38856 3.32734 3.38925 3.43156 3.81288 4.44096 4.65923 5.03714 5.25383 5.34219 5.37404 5.58000 5.71911 5.79705 5.84586 5.94469 6.20330 6.24099 6.26699 6.33992 6.54820 6.71247 6.90878 7.09673 7.24226 7.27150 7.41894 7.60078 7.93432 7.97027 7.99644 8.31096 8.39703 9.03257 9.60950 11.10678 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.009596 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.253820 B = 2917.218250 C = 3519.606028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.073 4.073 5 C -0.165 4.165 6 C 0.185 3.815 7 C -0.209 4.209 8 C -0.083 4.083 9 C -0.175 4.175 10 C 0.017 3.983 11 C 0.048 3.952 12 C -0.504 4.504 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.749 5.749 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 5.440 -11.046 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.170 4.170 6 C 0.084 3.916 7 C -0.232 4.232 8 C -0.101 4.101 9 C -0.195 4.195 10 C 0.016 3.984 11 C 0.012 3.988 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.383 5.383 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.194 5.573 -10.789 12.340 hybrid contribution -0.925 -0.458 -0.041 1.033 sum -3.119 5.115 -10.831 12.377 Atomic orbital electron populations 1.22230 0.95626 1.02595 1.01498 1.21318 0.93473 0.95292 0.86007 0.91575 1.20976 0.99563 0.94661 0.95849 1.19628 1.05329 1.00105 0.91895 1.18325 0.91669 0.88197 0.93453 1.20017 1.06830 0.98505 0.97856 1.20626 0.97939 0.96779 0.94779 1.20792 1.04790 1.00952 0.92936 1.19950 0.90020 0.89935 0.98490 1.18327 0.97804 0.97923 0.84795 1.21015 1.06142 1.35563 0.91505 0.92586 1.24991 0.96502 0.95897 0.96930 1.69958 1.34722 1.46346 1.02399 0.86583 0.83262 0.80045 0.78102 1.20639 1.21235 1.19862 1.44730 1.57382 1.29362 1.06842 0.91985 0.91523 0.93113 0.89286 0.90522 0.87915 0.87131 0.86614 0.95494 0.95352 0.92950 0.76205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.36 37.16 0.35 -1.68 16 2 C 0.14 2.09 4.32 -67.52 -0.29 1.80 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.07 -1.34 6.08 -27.24 -0.17 -1.50 16 5 C -0.17 -3.43 6.08 -104.26 -0.63 -4.06 16 6 C 0.18 3.38 7.03 -83.67 -0.59 2.80 16 7 C -0.21 -3.63 10.07 -39.20 -0.39 -4.02 16 8 C -0.08 -1.47 10.02 -39.71 -0.40 -1.87 16 9 C -0.17 -3.61 9.69 -39.56 -0.38 -3.99 16 10 C 0.02 0.38 5.07 -104.65 -0.53 -0.15 16 11 C 0.05 1.27 4.93 -29.04 -0.14 1.12 16 12 C -0.50 -14.22 9.09 -34.44 -0.31 -14.53 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.75 -11.19 6.17 -51.67 -0.32 -11.51 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 1.73 7.71 -51.93 -0.40 1.33 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 29 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 30 H 0.03 0.77 7.86 -51.92 -0.41 0.37 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.40 4.87 8.96 -40.82 -0.37 4.50 16 LS Contribution 271.03 15.07 4.08 4.08 Total: -1.00 -30.28 271.03 -8.63 -38.91 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.52 Total: 2.17 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.59 Total: -24.54 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.42 Total: -37.27 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.28 -8.63 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.234 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds