Wall clock time and date at job start Mon Mar 30 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.34357 * 2 1 4 4 C 1.53747 * 110.29938 * 122.11687 * 2 1 3 5 5 C 1.51223 * 104.54272 * 118.92978 * 4 2 1 6 6 C 1.38642 * 108.52935 * 0.02562 * 5 4 2 7 7 C 1.39629 * 119.02566 * 180.02562 * 6 5 4 8 8 C 1.37869 * 120.28452 * 0.02562 * 7 6 5 9 9 C 1.38263 * 120.22864 * 359.97438 * 8 7 6 10 10 C 1.38121 * 130.99338 * 180.02562 * 5 4 2 11 11 C 1.50694 * 119.92792 * 0.02562 * 10 5 4 12 12 C 1.50693 * 109.47601 * 84.97624 * 11 10 5 13 13 H 1.07996 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47456 * 89.99550 * 16 14 12 18 18 H 1.48504 * 109.47274 * 210.00099 * 16 14 12 19 19 H 1.48501 * 109.47046 * 329.99578 * 16 14 12 20 20 N 1.39575 * 111.64896 * 0.02562 * 6 5 4 21 21 H 1.08996 * 109.47032 * 180.65505 * 1 2 3 22 22 H 1.08996 * 109.47261 * 300.66126 * 1 2 3 23 23 H 1.09001 * 109.46541 * 60.66134 * 1 2 3 24 24 H 1.09001 * 110.41941 * 0.16316 * 4 2 1 25 25 H 1.09002 * 110.42599 * 237.69301 * 4 2 1 26 26 H 1.08003 * 119.85762 * 179.97438 * 7 6 5 27 27 H 1.08000 * 119.88712 * 179.97438 * 8 7 6 28 28 H 1.07994 * 120.08052 * 180.27150 * 9 8 7 29 29 H 1.09005 * 109.47418 * 204.98108 * 11 10 5 30 30 H 1.09009 * 109.47083 * 324.97445 * 11 10 5 31 31 H 0.97001 * 120.00330 * 179.97438 * 15 14 12 32 32 H 0.96992 * 124.96062 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0634 -0.7666 1.2213 5 6 2.8592 -1.9104 0.6338 6 6 2.7999 -1.8241 -0.7487 7 6 3.4656 -2.7817 -1.5165 8 6 4.1699 -3.7966 -0.9044 9 6 4.2228 -3.8736 0.4751 10 6 3.5670 -2.9285 1.2424 11 6 3.6228 -3.0108 2.7461 12 6 2.4088 -3.7447 3.2544 13 1 1.6708 -4.1149 2.5583 14 6 2.2401 -3.9435 4.6083 15 7 3.1390 -3.4932 5.4561 16 14 0.7356 -4.8539 5.2384 17 1 1.0318 -6.3071 5.3139 18 1 0.3819 -4.3499 6.5898 19 1 -0.4033 -4.6283 4.3124 20 7 2.0397 -0.7298 -1.1641 21 1 -0.3633 -1.0276 0.0117 22 1 -0.3633 0.5240 0.8840 23 1 -0.3632 0.5035 -0.8959 24 1 1.2372 -1.1471 1.8220 25 1 2.7074 -0.1244 1.8221 26 1 3.4280 -2.7275 -2.5945 27 1 4.6822 -4.5341 -1.5045 28 1 4.7788 -4.6671 0.9521 29 1 4.5234 -3.5457 3.0475 30 1 3.6407 -2.0044 3.1646 31 1 3.0202 -3.6328 6.4086 32 1 1.8719 -0.4883 -2.0884 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260557312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:24 Heat of formation + Delta-G solvation = -2.589576 kcal Electronic energy + Delta-G solvation = -14249.159696 eV Core-core repulsion = 11979.868684 eV Total energy + Delta-G solvation = -2269.291012 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23022 -37.66785 -35.42213 -33.43462 -31.75879 -30.65319 -28.59452 -27.13167 -25.05175 -22.32757 -22.04252 -21.47293 -18.50603 -17.82305 -16.78889 -16.42521 -16.31328 -15.83791 -15.10409 -14.48896 -14.23862 -13.83864 -13.70450 -13.25242 -13.14949 -13.11875 -12.77660 -12.65442 -12.46016 -12.29876 -12.18084 -11.81220 -11.57936 -11.14097 -10.79826 -10.58832 -9.27280 -8.19638 -8.09557 -6.30469 0.71890 0.86062 1.38801 1.39899 1.51322 2.40500 2.59155 3.11145 3.12251 3.79618 3.93877 4.16278 4.32131 4.36669 4.49537 4.63400 4.74300 4.77382 4.86434 4.92759 5.08296 5.13799 5.29985 5.36511 5.40034 5.44253 5.62825 5.72307 5.82041 5.93138 6.18334 6.22159 6.48876 6.81143 7.17096 7.37079 8.91382 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.009596 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.253820 B = 2917.218250 C = 3519.606028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 H 0.092 0.908 4 C -0.078 4.078 5 C -0.196 4.196 6 C 0.188 3.812 7 C -0.203 4.203 8 C -0.073 4.073 9 C -0.198 4.198 10 C -0.017 4.017 11 C 0.061 3.939 12 C -0.518 4.518 13 H 0.049 0.951 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.267 1.267 20 N -0.734 5.734 21 H 0.040 0.960 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.109 0.891 29 H -0.002 1.002 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 5.800 -13.477 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.110 0.890 4 C -0.116 4.116 5 C -0.201 4.201 6 C 0.085 3.915 7 C -0.225 4.225 8 C -0.091 4.091 9 C -0.218 4.218 10 C -0.018 4.018 11 C 0.024 3.976 12 C -0.556 4.556 13 H 0.067 0.933 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.191 1.191 20 N -0.369 5.369 21 H 0.060 0.940 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.127 0.873 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.577 5.958 -13.252 14.963 hybrid contribution -0.454 -0.530 0.658 0.959 sum -4.031 5.427 -12.594 14.294 Atomic orbital electron populations 1.22171 0.93883 1.01824 1.03408 1.21377 0.94721 0.95570 0.83859 0.88984 1.21023 0.98540 0.94509 0.97503 1.19854 1.05995 1.00469 0.93777 1.18488 0.91510 0.89059 0.92443 1.20465 1.05098 0.97226 0.99733 1.20975 0.97213 0.97439 0.93467 1.20859 1.05541 1.00807 0.94628 1.19760 0.93065 0.92539 0.96388 1.18029 0.95966 0.95575 0.88006 1.21244 1.06629 1.35872 0.91893 0.93314 1.25885 0.99679 0.96630 0.97052 1.70081 1.36674 1.47423 1.02810 0.85487 0.79347 0.78805 0.77683 1.19783 1.20295 1.19114 1.44707 1.56194 1.28055 1.07960 0.94035 0.90611 0.90258 0.91574 0.91343 0.84053 0.83434 0.87312 0.98402 0.97998 0.92622 0.73993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.36 71.98 0.67 -2.83 16 2 C 0.15 4.01 4.32 45.23 0.20 4.20 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.08 -2.92 6.08 30.27 0.18 -2.73 16 5 C -0.20 -8.27 6.08 -19.63 -0.12 -8.39 16 6 C 0.19 6.51 7.03 38.34 0.27 6.78 16 7 C -0.20 -6.34 10.07 22.52 0.23 -6.11 16 8 C -0.07 -2.42 10.02 22.19 0.22 -2.20 16 9 C -0.20 -8.34 9.69 22.28 0.22 -8.13 16 10 C -0.02 -0.80 5.07 -19.89 -0.10 -0.90 16 11 C 0.06 3.44 4.93 29.10 0.14 3.58 16 12 C -0.52 -30.60 9.09 25.60 0.23 -30.36 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 14 C 0.01 0.32 5.46 84.66 0.46 0.78 16 15 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 16 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 N -0.73 -19.59 6.17 -317.38 -1.96 -21.55 16 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 2.70 7.71 -2.39 -0.02 2.68 16 25 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 28 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 29 H 0.00 -0.14 8.05 -2.38 -0.02 -0.16 16 30 H 0.00 0.10 7.86 -2.38 -0.02 0.09 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.42 8.30 8.96 -92.71 -0.83 7.47 16 Total: -1.00 -67.99 271.03 3.23 -64.76 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.27 Total: 12.60 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 2.61 Total: -46.31 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.67 Total: -78.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -67.99 3.23 -64.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.171 kcal (2) G-P(sol) polarization free energy of solvation -67.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds