Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46897 * 2 1 4 4 C 1.50698 * 109.47007 * 119.99764 * 2 1 3 5 5 H 1.07997 * 119.99837 * 114.36443 * 4 2 1 6 6 C 1.37873 * 119.99961 * 294.36200 * 4 2 1 7 7 N 1.31522 * 120.00040 * 156.93024 * 6 4 2 8 8 Si 1.86801 * 120.00104 * 336.93014 * 6 4 2 9 9 H 1.48507 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48492 * 109.47127 * 299.99720 * 8 6 4 11 11 H 1.48497 * 109.47062 * 60.00169 * 8 6 4 12 12 C 1.50700 * 109.47118 * 240.00127 * 2 1 3 13 13 C 1.38220 * 120.41985 * 299.99675 * 12 2 1 14 14 N 1.31856 * 120.76648 * 179.97438 * 13 12 2 15 15 C 1.31880 * 121.72225 * 0.02562 * 14 13 12 16 16 C 1.38182 * 120.76831 * 359.97438 * 15 14 13 17 17 C 1.38629 * 120.42074 * 119.72569 * 12 2 1 18 18 C 1.50708 * 120.78806 * 359.97438 * 17 12 2 19 19 C 1.52999 * 117.49743 * 188.62199 * 18 17 12 20 20 C 1.52998 * 60.00039 * 252.51249 * 19 18 17 21 21 H 1.09002 * 109.47128 * 53.41715 * 1 2 3 22 22 H 1.09001 * 109.47164 * 173.40992 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.40964 * 1 2 3 24 24 H 0.97001 * 119.99125 * 354.93280 * 7 6 4 25 25 H 1.08006 * 119.61661 * 0.02562 * 13 12 2 26 26 H 1.08008 * 119.61336 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.41523 * 180.02562 * 16 15 14 28 28 H 1.08993 * 115.54740 * 334.32708 * 18 17 12 29 29 H 1.09003 * 117.49929 * 0.02562 * 19 18 17 30 30 H 1.08996 * 117.49931 * 145.01504 * 19 18 17 31 31 H 1.08991 * 117.49672 * 252.51204 * 20 19 18 32 32 H 1.08996 * 117.49687 * 107.49028 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6384 1.1340 6 6 1.7977 -0.1754 2.4793 7 7 1.8088 -0.9525 3.5403 8 14 1.4642 1.6533 2.6645 9 1 1.2444 1.9737 4.0979 10 1 2.6288 2.4226 2.1578 11 1 0.2536 2.0170 1.8853 12 6 2.0323 -0.7104 -1.2305 13 6 1.7038 -2.0336 -1.4578 14 7 2.1391 -2.6616 -2.5324 15 6 2.8993 -2.0604 -3.4267 16 6 3.2685 -0.7384 -3.2666 17 6 2.8252 -0.0434 -2.1515 18 6 3.2002 1.4014 -1.9436 19 6 3.9038 2.1214 -3.0957 20 6 4.6894 1.7368 -1.8405 21 1 -0.3633 0.6125 -0.8252 22 1 -0.3633 -1.0209 -0.1179 23 1 -0.3633 0.4083 0.9430 24 1 1.9086 -1.9119 3.4376 25 1 1.0826 -2.5590 -0.7475 26 1 3.2365 -2.6073 -4.2949 27 1 3.8909 -0.2515 -4.0027 28 1 2.5098 1.9830 -1.3329 29 1 4.0950 1.5503 -4.0042 30 1 3.6761 3.1771 -3.2433 31 1 4.9786 2.5394 -1.1622 32 1 5.3978 0.9126 -1.9230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260580183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = 29.255520 kcal Electronic energy + Delta-G solvation = -14432.515991 eV Core-core repulsion = 12164.605886 eV Total energy + Delta-G solvation = -2267.910105 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.40491 -38.08542 -36.67710 -33.94080 -32.42692 -30.55478 -26.80694 -25.66571 -24.75757 -23.19291 -21.80353 -21.16831 -19.60116 -18.07180 -17.12641 -16.21091 -15.84048 -15.45993 -15.31414 -14.81488 -14.74075 -14.40204 -13.94764 -13.54023 -13.13775 -12.79647 -12.43660 -12.33574 -12.11365 -11.99482 -11.78860 -11.61153 -11.21563 -11.11099 -10.44112 -10.23076 -10.03177 -9.71882 -8.70692 -6.32733 0.29271 0.40732 1.46781 1.53019 1.72384 2.50782 2.78269 3.02294 3.15524 3.60087 3.62917 3.88792 3.99848 4.15309 4.18914 4.24100 4.46156 4.55810 4.70767 4.76546 4.84665 4.88237 4.95149 5.07558 5.08742 5.23981 5.27017 5.34427 5.43710 5.74967 5.87252 6.02079 6.12145 6.57695 7.11382 7.40732 8.61689 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.011676 C = 0.009180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.869956 B = 2397.565573 C = 3049.466745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 H 0.045 0.955 4 C -0.596 4.596 5 H 0.013 0.987 6 C -0.011 4.011 7 N -0.932 5.932 8 Si 1.073 2.927 9 H -0.291 1.291 10 H -0.261 1.261 11 H -0.244 1.244 12 C -0.100 4.100 13 C 0.084 3.916 14 N -0.515 5.515 15 C 0.071 3.929 16 C -0.168 4.168 17 C -0.026 4.026 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.168 4.168 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.253 0.747 25 H 0.130 0.870 26 H 0.185 0.815 27 H 0.166 0.834 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 7.694 -14.932 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.033 3.967 3 H 0.063 0.937 4 C -0.633 4.633 5 H 0.031 0.969 6 C -0.210 4.210 7 N -0.567 5.567 8 Si 0.894 3.106 9 H -0.217 1.217 10 H -0.186 1.186 11 H -0.169 1.169 12 C -0.102 4.102 13 C -0.072 4.072 14 N -0.224 5.224 15 C -0.086 4.086 16 C -0.187 4.187 17 C -0.034 4.034 18 C -0.166 4.166 19 C -0.180 4.180 20 C -0.205 4.205 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.148 0.852 26 H 0.202 0.798 27 H 0.184 0.816 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.474 7.971 -13.945 16.252 hybrid contribution 0.456 -1.276 -0.147 1.363 sum 2.930 6.695 -14.092 15.874 Atomic orbital electron populations 1.22096 0.96998 1.00296 1.00206 1.18041 0.93002 0.95801 0.89876 0.93739 1.21970 1.39678 1.08963 0.92683 0.96897 1.27121 0.92716 1.09401 0.91769 1.70978 1.47067 1.05627 1.33033 0.83707 0.79257 0.71228 0.76408 1.21738 1.18561 1.16855 1.20997 0.97360 0.95406 0.96456 1.22359 0.98424 0.92195 0.94215 1.67606 1.11921 1.39553 1.03340 1.23194 0.94421 0.92987 0.98024 1.22240 1.02173 0.95781 0.98510 1.19732 0.94912 0.95279 0.93485 1.21051 0.97456 0.92062 1.06028 1.23199 1.00865 1.01752 0.92199 1.23050 0.91994 1.03558 1.01918 0.92932 0.94320 0.93587 0.93858 0.85213 0.79815 0.81633 0.87344 0.86809 0.86359 0.87655 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 8.83 71.98 0.64 -5.28 16 2 C 0.05 2.42 1.96 -12.29 -0.02 2.39 16 3 H 0.04 1.97 4.20 -2.39 -0.01 1.96 16 4 C -0.60 -33.72 8.49 25.60 0.22 -33.50 16 5 H 0.01 0.81 7.78 -2.91 -0.02 0.79 16 6 C -0.01 -0.64 5.20 84.65 0.44 -0.20 16 7 N -0.93 -58.39 13.70 21.45 0.29 -58.10 16 8 Si 1.07 48.67 26.44 68.60 1.81 50.49 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.24 -9.80 6.14 99.48 0.61 -9.19 16 12 C -0.10 -4.27 4.75 -19.78 -0.09 -4.36 16 13 C 0.08 3.63 9.77 84.69 0.83 4.46 16 14 N -0.51 -20.13 10.36 -195.84 -2.03 -22.16 16 15 C 0.07 2.16 11.18 84.67 0.95 3.11 16 16 C -0.17 -4.80 9.38 22.36 0.21 -4.60 16 17 C -0.03 -0.91 5.64 -19.67 -0.11 -1.02 16 18 C -0.15 -4.38 5.40 -11.54 -0.06 -4.44 16 19 C -0.14 -2.85 9.88 30.59 0.30 -2.55 16 20 C -0.17 -4.19 10.18 30.59 0.31 -3.88 16 21 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 23 H 0.05 2.01 5.46 -2.39 -0.01 1.99 16 24 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 25 H 0.13 6.02 7.55 -2.91 -0.02 6.00 16 26 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.17 3.30 6.17 -2.91 -0.02 3.28 16 28 H 0.11 3.42 6.41 -2.39 -0.02 3.41 16 29 H 0.11 1.84 6.26 -2.39 -0.01 1.82 16 30 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -67.63 261.91 4.66 -62.97 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.98 Total: 16.66 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.60 Total: -49.86 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.74 Total: -80.26 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.81 Total: 50.49 kcal Total: -67.63 4.66 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.224 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds