Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47175 * 89.99784 * 3 2 1 5 5 H 1.48494 * 109.46978 * 209.99927 * 3 2 1 6 6 H 1.48498 * 109.46808 * 329.99618 * 3 2 1 7 7 C 1.37879 * 120.00240 * 180.27187 * 2 1 3 8 8 H 1.07992 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99654 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.28811 * 56.79988 * 9 7 2 11 11 C 1.54263 * 110.32450 * 294.66887 * 9 7 2 12 12 C 1.54382 * 105.05775 * 241.10570 * 11 9 7 13 13 N 1.48559 * 104.59776 * 23.85154 * 12 11 9 14 14 C 1.48557 * 104.22315 * 320.52056 * 13 12 11 15 15 H 1.09007 * 110.40563 * 280.70175 * 14 13 12 16 16 C 1.50704 * 110.41527 * 158.26013 * 14 13 12 17 17 C 1.38231 * 119.99857 * 154.96229 * 16 14 13 18 18 C 1.38234 * 119.99790 * 179.78917 * 17 16 14 19 19 C 1.38246 * 120.00008 * 0.43905 * 18 17 16 20 20 C 1.38233 * 119.99650 * 359.81433 * 19 18 17 21 21 C 1.38233 * 119.99508 * 335.23481 * 16 14 13 22 22 H 0.96995 * 120.00437 * 359.72621 * 1 2 3 23 23 H 1.08992 * 110.32595 * 0.02562 * 11 9 7 24 24 H 1.09000 * 110.32108 * 122.21285 * 11 9 7 25 25 H 1.08997 * 110.40999 * 142.63149 * 12 11 9 26 26 H 1.08996 * 110.41063 * 264.95856 * 12 11 9 27 27 H 1.00901 * 111.00411 * 200.95720 * 13 12 11 28 28 H 1.07999 * 120.00628 * 359.97438 * 17 16 14 29 29 H 1.07995 * 120.00721 * 180.27701 * 18 17 16 30 30 H 1.07993 * 119.99985 * 179.83570 * 19 18 17 31 31 H 1.07998 * 120.00153 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00683 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1939 -0.0061 9 6 1.2511 -2.4991 -0.0124 10 1 0.5776 -2.5422 -0.8684 11 6 0.4598 -2.6677 1.3010 12 6 1.0338 -3.9434 1.9541 13 7 2.3986 -4.0751 1.3824 14 6 2.2366 -3.6870 -0.0424 15 1 1.8180 -4.5139 -0.6163 16 6 3.5591 -3.2583 -0.6241 17 6 3.7780 -3.3520 -1.9858 18 6 4.9895 -2.9546 -2.5199 19 6 5.9853 -2.4721 -1.6912 20 6 5.7681 -2.3833 -0.3289 21 6 4.5550 -2.7767 0.2047 22 1 -0.4850 0.8400 0.0040 23 1 0.6160 -1.8065 1.9504 24 1 -0.6019 -2.7955 1.0896 25 1 1.0847 -3.8264 3.0365 26 1 0.4258 -4.8100 1.6943 27 1 2.7347 -5.0231 1.4631 28 1 3.0016 -3.7328 -2.6327 29 1 5.1592 -3.0235 -3.5842 30 1 6.9327 -2.1641 -2.1082 31 1 6.5461 -2.0068 0.3186 32 1 4.3854 -2.7072 1.2690 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260607322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 27.883970 kcal Electronic energy + Delta-G solvation = -14688.701902 eV Core-core repulsion = 12420.732322 eV Total energy + Delta-G solvation = -2267.969580 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03325 -36.91991 -32.60439 -31.12919 -30.17491 -29.04089 -26.92098 -24.42520 -21.91008 -21.65320 -19.90962 -19.00186 -16.61004 -16.04213 -15.42312 -14.55570 -14.33476 -14.15151 -13.61151 -12.75316 -12.53700 -12.48587 -12.02294 -11.69150 -11.50637 -10.98318 -10.76143 -10.69936 -10.40996 -10.34657 -10.11890 -9.78762 -9.35649 -8.71733 -8.33752 -8.11524 -7.89048 -7.67433 -5.93063 -3.91823 2.13483 2.18102 3.37020 3.43339 3.49390 4.53148 4.55151 4.95819 5.40953 5.54828 5.60363 5.68271 5.82827 5.90287 5.98201 6.12986 6.24363 6.33899 6.38391 6.56804 6.76302 6.79854 6.95244 7.10963 7.17689 7.25861 7.33814 7.52171 7.63908 7.79062 7.94210 8.05381 8.08336 8.53602 9.11149 9.71237 11.17480 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.014967 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.103928 B = 1870.357234 C = 2749.405557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.058 3.942 10 H 0.032 0.968 11 C -0.096 4.096 12 C 0.034 3.966 13 N -0.653 5.653 14 C 0.100 3.900 15 H 0.034 0.966 16 C -0.017 4.017 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.083 4.083 22 H 0.257 0.743 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.317 0.683 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -7.097 -0.541 9.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.142 4.142 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.039 3.961 10 H 0.050 0.950 11 C -0.135 4.135 12 C -0.095 4.095 13 N -0.280 5.280 14 C -0.010 4.010 15 H 0.052 0.948 16 C -0.018 4.018 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.101 4.101 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.362 -6.327 -0.282 8.976 hybrid contribution -0.180 0.336 -0.416 0.565 sum 6.181 -5.990 -0.698 8.636 Atomic orbital electron populations 1.69978 1.05847 1.26230 1.51525 1.24955 0.94712 0.98906 0.95619 0.86703 0.80125 0.83952 0.78009 1.20852 1.19803 1.21535 1.21446 0.93735 0.89452 1.48853 0.90891 1.19396 0.91382 0.91617 0.93708 0.94964 1.22292 0.97359 0.94742 0.99066 1.22971 0.89045 0.98360 0.99125 1.63531 1.23455 1.27156 1.13862 1.21645 0.93643 0.98047 0.87625 0.94818 1.19495 0.94101 0.95514 0.92695 1.20847 0.96696 1.01696 0.94885 1.20874 0.94116 1.00874 0.98751 1.20897 0.98835 1.02219 0.94032 1.21067 0.97686 1.01479 0.95050 1.21017 0.91790 0.96401 1.00878 0.93339 0.91141 0.93959 0.91694 0.96006 0.86934 0.87098 0.87247 0.87450 0.87214 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 12.67 55.43 0.70 -25.23 16 2 C 0.06 1.64 5.17 -17.82 -0.09 1.54 16 3 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.50 -13.44 7.70 -34.44 -0.27 -13.70 16 8 H 0.07 1.98 4.55 -52.49 -0.24 1.74 16 9 C 0.06 1.42 2.84 -90.39 -0.26 1.16 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.10 -2.21 5.90 -25.35 -0.15 -2.36 16 12 C 0.03 0.64 7.47 -2.18 -0.02 0.62 16 13 N -0.65 -12.21 6.08 -103.95 -0.63 -12.85 16 14 C 0.10 2.05 3.29 -67.22 -0.22 1.83 16 15 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 16 C -0.02 -0.35 3.70 -104.62 -0.39 -0.74 16 17 C -0.12 -2.32 9.73 -39.59 -0.39 -2.70 16 18 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 19 C -0.14 -2.39 10.05 -39.58 -0.40 -2.78 16 20 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 21 C -0.08 -1.63 7.34 -39.58 -0.29 -1.92 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 23 H 0.07 1.81 7.49 -51.93 -0.39 1.42 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.32 5.05 8.92 -39.29 -0.35 4.70 16 28 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.65 7.30 -52.49 -0.38 2.27 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -28.93 262.38 -8.55 -37.48 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.30 Total: 4.11 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.26 Total: -24.45 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.07 Total: -38.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.93 -8.55 -37.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260607322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.368 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds