Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47175 * 89.99784 * 3 2 1 5 5 H 1.48494 * 109.46978 * 209.99927 * 3 2 1 6 6 H 1.48498 * 109.46808 * 329.99618 * 3 2 1 7 7 C 1.37879 * 120.00240 * 180.27187 * 2 1 3 8 8 H 1.07992 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99654 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.28811 * 56.79988 * 9 7 2 11 11 C 1.54263 * 110.32450 * 294.66887 * 9 7 2 12 12 C 1.54382 * 105.05775 * 241.10570 * 11 9 7 13 13 N 1.48559 * 104.59776 * 23.85154 * 12 11 9 14 14 C 1.48557 * 104.22315 * 320.52056 * 13 12 11 15 15 H 1.09007 * 110.40563 * 280.70175 * 14 13 12 16 16 C 1.50704 * 110.41527 * 158.26013 * 14 13 12 17 17 C 1.38231 * 119.99857 * 154.96229 * 16 14 13 18 18 C 1.38234 * 119.99790 * 179.78917 * 17 16 14 19 19 C 1.38246 * 120.00008 * 0.43905 * 18 17 16 20 20 C 1.38233 * 119.99650 * 359.81433 * 19 18 17 21 21 C 1.38233 * 119.99508 * 335.23481 * 16 14 13 22 22 H 0.96995 * 120.00437 * 359.72621 * 1 2 3 23 23 H 1.08992 * 110.32595 * 0.02562 * 11 9 7 24 24 H 1.09000 * 110.32108 * 122.21285 * 11 9 7 25 25 H 1.08997 * 110.40999 * 142.63149 * 12 11 9 26 26 H 1.08996 * 110.41063 * 264.95856 * 12 11 9 27 27 H 1.00901 * 111.00411 * 200.95720 * 13 12 11 28 28 H 1.07999 * 120.00628 * 359.97438 * 17 16 14 29 29 H 1.07995 * 120.00721 * 180.27701 * 18 17 16 30 30 H 1.07993 * 119.99985 * 179.83570 * 19 18 17 31 31 H 1.07998 * 120.00153 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00683 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1939 -0.0061 9 6 1.2511 -2.4991 -0.0124 10 1 0.5776 -2.5422 -0.8684 11 6 0.4598 -2.6677 1.3010 12 6 1.0338 -3.9434 1.9541 13 7 2.3986 -4.0751 1.3824 14 6 2.2366 -3.6870 -0.0424 15 1 1.8180 -4.5139 -0.6163 16 6 3.5591 -3.2583 -0.6241 17 6 3.7780 -3.3520 -1.9858 18 6 4.9895 -2.9546 -2.5199 19 6 5.9853 -2.4721 -1.6912 20 6 5.7681 -2.3833 -0.3289 21 6 4.5550 -2.7767 0.2047 22 1 -0.4850 0.8400 0.0040 23 1 0.6160 -1.8065 1.9504 24 1 -0.6019 -2.7955 1.0896 25 1 1.0847 -3.8264 3.0365 26 1 0.4258 -4.8100 1.6943 27 1 2.7347 -5.0231 1.4631 28 1 3.0016 -3.7328 -2.6327 29 1 5.1592 -3.0235 -3.5842 30 1 6.9327 -2.1641 -2.1082 31 1 6.5461 -2.0068 0.3186 32 1 4.3854 -2.7072 1.2690 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260607322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 10.650244 kcal Electronic energy + Delta-G solvation = -14689.449213 eV Core-core repulsion = 12420.732322 eV Total energy + Delta-G solvation = -2268.716890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55108 -38.47329 -34.64417 -32.60658 -31.57084 -30.89549 -28.52891 -26.39252 -23.39797 -23.10407 -21.57268 -20.73921 -18.41598 -17.65445 -17.00394 -16.49036 -15.96478 -15.62095 -15.11330 -14.35355 -14.21737 -13.98888 -13.69595 -13.42551 -13.15084 -12.82882 -12.54620 -12.53876 -12.19268 -11.81759 -11.67385 -11.64253 -11.21449 -10.68392 -10.44495 -9.53692 -9.38709 -9.16463 -8.06213 -6.08670 0.72525 0.77653 1.38713 1.40244 1.50000 2.47001 3.12139 3.27639 3.46023 4.14205 4.23578 4.27387 4.35732 4.44245 4.50176 4.52868 4.71071 4.89931 4.91877 4.97258 5.11576 5.30973 5.37850 5.41154 5.54277 5.70268 5.80285 5.87581 5.91192 5.94733 6.19000 6.38533 6.49974 6.69529 7.00530 7.56418 9.04306 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.014967 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.103928 B = 1870.357234 C = 2749.405557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.048 3.952 10 H -0.002 1.002 11 C -0.092 4.092 12 C 0.045 3.955 13 N -0.654 5.654 14 C 0.109 3.891 15 H 0.044 0.956 16 C -0.041 4.041 17 C -0.140 4.140 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.100 4.100 22 H 0.255 0.745 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.338 0.662 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -7.644 -0.800 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.029 3.971 10 H 0.016 0.984 11 C -0.131 4.131 12 C -0.084 4.084 13 N -0.283 5.283 14 C -0.001 4.001 15 H 0.062 0.938 16 C -0.041 4.041 17 C -0.158 4.158 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.119 4.119 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.307 -6.892 -0.535 10.807 hybrid contribution -0.742 0.473 -0.378 0.958 sum 7.565 -6.419 -0.913 9.963 Atomic orbital electron populations 1.70096 1.07025 1.26584 1.53138 1.25647 0.95428 1.01873 0.96041 0.85845 0.78968 0.80696 0.77995 1.20477 1.19520 1.21431 1.21763 0.93917 0.90505 1.47246 0.90900 1.19344 0.91928 0.92788 0.93000 0.98386 1.22088 0.96932 0.95873 0.98165 1.22868 0.89160 0.96759 0.99602 1.63456 1.23353 1.28858 1.12662 1.21427 0.93203 0.96577 0.88900 0.93791 1.19565 0.94056 0.96993 0.93523 1.21086 0.97899 1.02255 0.94590 1.21267 0.93335 0.99668 1.00464 1.21328 1.00041 1.00876 0.93591 1.21399 0.97468 1.00830 0.96146 1.21029 0.92851 0.97583 1.00393 0.93637 0.94511 0.94964 0.90098 0.93491 0.84649 0.86582 0.84329 0.84117 0.84919 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 12.67 21.45 0.27 -54.83 16 2 C 0.01 0.40 5.17 84.66 0.44 0.84 16 3 Si 0.94 45.46 29.54 68.60 2.03 47.49 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.50 -27.18 7.70 25.60 0.20 -26.98 16 8 H 0.07 3.96 4.55 -2.91 -0.01 3.94 16 9 C 0.05 2.42 2.84 -10.64 -0.03 2.39 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.09 -4.31 5.90 31.49 0.19 -4.12 16 12 C 0.05 1.63 7.47 86.45 0.65 2.27 16 13 N -0.65 -23.56 6.08 -482.79 -2.93 -26.49 16 14 C 0.11 4.41 3.29 44.32 0.15 4.56 16 15 H 0.04 1.67 8.13 -2.38 -0.02 1.65 16 16 C -0.04 -1.62 3.70 -19.87 -0.07 -1.69 16 17 C -0.14 -5.09 9.73 22.27 0.22 -4.87 16 18 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 19 C -0.14 -4.25 10.05 22.27 0.22 -4.02 16 20 C -0.14 -4.65 10.05 22.27 0.22 -4.42 16 21 C -0.10 -3.84 7.34 22.27 0.16 -3.68 16 22 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 23 H 0.04 1.93 7.49 -2.39 -0.02 1.91 16 24 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.34 9.98 8.92 -89.69 -0.80 9.18 16 28 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.12 4.76 7.30 -2.91 -0.02 4.74 16 Total: -1.00 -62.43 262.38 2.23 -60.20 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.31 Total: 17.23 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 2.56 Total: -43.59 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.66 Total: -81.32 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -62.43 2.23 -60.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260607322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -62.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds