Wall clock time and date at job start Mon Mar 30 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47371 * 274.67146 * 3 2 1 5 5 H 1.48506 * 109.46598 * 34.66857 * 3 2 1 6 6 H 1.48506 * 109.47133 * 154.66433 * 3 2 1 7 7 C 1.39949 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00643 * 162.22930 * 7 2 1 9 9 C 1.41397 * 119.99550 * 342.23018 * 7 2 1 10 10 C 1.40718 * 120.24492 * 155.28897 * 9 7 2 11 11 C 1.37610 * 119.74665 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.25238 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75280 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.46925 * 20.00421 * 13 12 11 15 15 N 1.46907 * 109.46723 * 140.00413 * 13 12 11 16 16 C 1.52997 * 109.46904 * 259.99990 * 13 12 11 17 17 C 1.53005 * 117.49425 * 179.97438 * 16 13 12 18 18 C 1.52997 * 117.49868 * 248.62303 * 16 13 12 19 19 C 1.38634 * 120.49397 * 0.25530 * 12 11 10 20 20 C 1.37615 * 120.25298 * 359.44613 * 19 12 11 21 21 H 0.96994 * 119.99999 * 359.97438 * 1 2 3 22 22 H 1.08007 * 120.12584 * 359.97438 * 10 9 7 23 23 H 1.08008 * 119.88019 * 179.97438 * 11 10 9 24 24 H 1.00891 * 111.00181 * 60.00168 * 15 13 12 25 25 H 1.00900 * 110.99345 * 183.95500 * 15 13 12 26 26 H 1.08998 * 115.56205 * 34.31502 * 16 13 12 27 27 H 1.08998 * 117.49984 * 0.02562 * 17 16 13 28 28 H 1.09000 * 117.49518 * 214.98309 * 17 16 13 29 29 H 1.08996 * 117.50082 * 145.02918 * 18 16 13 30 30 H 1.09000 * 117.51943 * 359.97438 * 18 16 13 31 31 H 1.08000 * 119.87480 * 179.69950 * 19 12 11 32 32 H 1.07998 * 120.13017 * 180.27112 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3910 2.1035 -1.3954 5 1 1.4924 2.6221 0.7965 6 1 3.5857 1.4137 0.5991 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2860 9 6 1.3517 -2.4074 0.3727 10 6 1.8219 -3.6493 -0.0930 11 6 1.1749 -4.8063 0.2762 12 6 0.0635 -4.7517 1.1032 13 6 -0.6367 -6.0258 1.5000 14 1 0.0380 -6.8702 1.3594 15 7 -1.0344 -5.9466 2.9120 16 6 -1.8806 -6.2164 0.6298 17 6 -2.7334 -7.4619 0.8796 18 6 -3.2451 -6.0849 1.3094 19 6 -0.4119 -3.5334 1.5632 20 6 0.2229 -2.3641 1.2118 21 1 -0.4850 0.8400 0.0004 22 1 2.6868 -3.6941 -0.7384 23 1 1.5337 -5.7607 -0.0803 24 1 -1.6606 -5.1711 3.0684 25 1 -1.4485 -6.8136 3.2201 26 1 -1.7941 -5.8637 -0.3979 27 1 -2.4085 -8.1453 1.6641 28 1 -3.2081 -7.9282 0.0163 29 1 -4.0563 -5.6459 0.7287 30 1 -3.2570 -5.8632 2.3765 31 1 -1.2814 -3.5022 2.2031 32 1 -0.1466 -1.4164 1.5748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260623866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:36 Heat of formation + Delta-G solvation = 36.560246 kcal Electronic energy + Delta-G solvation = -14022.170222 eV Core-core repulsion = 11754.576874 eV Total energy + Delta-G solvation = -2267.593348 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.68055 -36.88623 -33.84971 -32.36532 -29.55907 -29.24450 -26.38014 -23.87042 -22.27490 -20.93249 -20.61407 -18.94876 -17.26061 -15.99009 -15.59085 -15.01244 -14.78470 -13.97799 -13.53393 -13.32859 -12.45242 -12.21136 -11.84171 -11.78120 -11.55315 -11.39347 -11.06152 -10.91557 -10.78402 -10.36970 -10.12001 -9.81964 -9.38848 -9.33705 -9.08179 -8.30516 -7.39050 -7.23460 -6.72247 -4.29972 2.79657 3.08808 3.12498 3.13482 3.22982 3.96139 4.00215 4.60466 4.98899 5.04625 5.14126 5.26035 5.67894 5.68891 5.81759 5.94394 6.09766 6.18626 6.26539 6.35762 6.45584 6.50838 6.98283 7.11807 7.32375 7.41478 7.56859 7.67100 7.78730 7.97261 8.10108 8.19239 8.34906 8.68878 8.94396 9.02760 10.22550 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.053667 B = 0.006770 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.611890 B = 4134.960220 C = 4338.203012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.226 4.226 11 C -0.087 4.087 12 C -0.196 4.196 13 C 0.182 3.818 14 H 0.074 0.926 15 N -0.838 5.838 16 C -0.166 4.166 17 C -0.191 4.191 18 C -0.187 4.187 19 C -0.082 4.082 20 C -0.166 4.166 21 H 0.279 0.721 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.340 0.660 25 H 0.326 0.674 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -6.749 1.925 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.107 3.893 10 C -0.245 4.245 11 C -0.105 4.105 12 C -0.197 4.197 13 C 0.070 3.930 14 H 0.092 0.908 15 N -0.368 5.368 16 C -0.187 4.187 17 C -0.228 4.228 18 C -0.225 4.225 19 C -0.101 4.101 20 C -0.185 4.185 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.104 0.896 24 H 0.155 0.845 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.579 -6.462 2.076 7.673 hybrid contribution -0.780 0.655 -0.528 1.147 sum -4.359 -5.807 1.548 7.424 Atomic orbital electron populations 1.69830 1.07570 1.29038 1.35642 1.25892 0.94693 1.01231 0.92277 0.86349 0.80819 0.80857 0.78971 1.19656 1.20089 1.18445 1.19574 0.98061 0.91322 1.40455 0.90564 1.17617 0.91148 0.91986 0.88515 1.20930 1.03748 0.92931 1.06911 1.20324 0.95584 0.96422 0.98193 1.18781 1.00653 0.92441 1.07850 1.19574 0.91960 0.96769 0.84653 0.90785 1.59029 1.50186 1.07829 1.19709 1.23491 0.92899 1.00213 1.02062 1.22960 1.05455 0.91122 1.03252 1.22985 0.98291 1.00186 1.01007 1.20326 0.98217 0.92590 0.98997 1.21281 0.99392 0.96700 1.01124 0.91016 0.89121 0.89608 0.84511 0.86173 0.87713 0.89292 0.89331 0.89160 0.89114 0.89924 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.80 10.97 55.55 0.61 -20.19 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.11 2.98 5.57 -106.82 -0.60 2.38 16 10 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 11 C -0.09 -1.96 9.64 -39.66 -0.38 -2.34 16 12 C -0.20 -4.26 4.96 -104.33 -0.52 -4.77 16 13 C 0.18 3.17 3.36 -68.86 -0.23 2.94 16 14 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 15 N -0.84 -13.17 8.35 -5.65 -0.05 -13.21 16 16 C -0.17 -2.60 5.68 -90.62 -0.52 -3.12 16 17 C -0.19 -2.39 9.94 -26.70 -0.27 -2.66 16 18 C -0.19 -2.53 9.62 -26.70 -0.26 -2.78 16 19 C -0.08 -1.93 9.26 -39.66 -0.37 -2.30 16 20 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 21 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 22 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 23 H 0.09 1.71 8.03 -52.48 -0.42 1.29 16 24 H 0.34 5.30 5.84 -39.30 -0.23 5.07 16 25 H 0.33 4.25 8.01 -39.29 -0.31 3.94 16 26 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 27 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.15 6.15 -51.93 -0.32 0.83 16 31 H 0.08 1.76 6.65 -52.49 -0.35 1.41 16 32 H 0.12 3.15 6.17 -52.49 -0.32 2.82 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -27.41 266.18 -8.75 -36.16 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -4.01 Total: 13.78 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: -4.28 Total: -34.39 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.56 Total: -33.41 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.41 -8.75 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.717 kcal (2) G-P(sol) polarization free energy of solvation -27.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds