Wall clock time and date at job start Mon Mar 30 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47393 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47138 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.47011 * 149.99852 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00264 * 161.48608 * 7 2 1 9 9 C 1.41396 * 119.99798 * 341.48674 * 7 2 1 10 10 C 1.40714 * 120.24654 * 335.88232 * 9 7 2 11 11 C 1.37617 * 119.74228 * 179.78990 * 10 9 7 12 12 C 1.38638 * 120.25160 * 0.48806 * 11 10 9 13 13 C 1.50697 * 119.74978 * 179.76375 * 12 11 10 14 14 H 1.09005 * 109.47166 * 159.97987 * 13 12 11 15 15 N 1.46898 * 109.47492 * 39.97736 * 13 12 11 16 16 C 1.53008 * 109.47188 * 279.97916 * 13 12 11 17 17 C 1.53001 * 117.49483 * 248.62538 * 16 13 12 18 18 C 1.52996 * 117.49904 * 180.02562 * 16 13 12 19 19 C 1.38638 * 120.49817 * 359.74126 * 12 11 10 20 20 C 1.37617 * 120.24886 * 0.02562 * 19 12 11 21 21 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.12648 * 0.02562 * 10 9 7 23 23 H 1.08004 * 119.87711 * 180.23011 * 11 10 9 24 24 H 1.00901 * 111.00046 * 300.00024 * 15 13 12 25 25 H 1.00905 * 110.99618 * 63.95148 * 15 13 12 26 26 H 1.08996 * 115.54600 * 34.33203 * 16 13 12 27 27 H 1.08996 * 117.50268 * 359.97438 * 17 16 13 28 28 H 1.09002 * 117.49175 * 145.02211 * 17 16 13 29 29 H 1.09000 * 117.49990 * 214.97705 * 18 16 13 30 30 H 1.08996 * 117.49745 * 359.97438 * 18 16 13 31 31 H 1.07996 * 119.87031 * 179.97438 * 19 12 11 32 32 H 1.08002 * 120.12491 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0462 -1.2363 -0.2964 9 6 1.3560 -2.4046 0.3899 10 6 0.2297 -2.3542 1.2319 11 6 -0.3996 -3.5211 1.6009 12 6 0.0781 -4.7436 1.1545 13 6 -0.6166 -6.0148 1.5698 14 1 -0.3550 -6.8148 0.8772 15 7 -2.0707 -5.8069 1.5511 16 6 -0.1746 -6.3991 2.9834 17 6 0.6889 -7.6528 3.1371 18 6 -0.7722 -7.6706 3.5892 19 6 1.1898 -4.8055 0.3285 20 6 1.8321 -3.6511 -0.0571 21 1 -0.4850 0.8400 0.0004 22 1 -0.1417 -1.4033 1.5841 23 1 -1.2665 -3.4847 2.2441 24 1 -2.3387 -5.0695 2.1856 25 1 -2.3964 -5.6151 0.6156 26 1 0.0235 -5.5654 3.6569 27 1 0.9417 -8.2040 2.2314 28 1 1.4554 -7.6439 3.9120 29 1 -0.9673 -7.6735 4.6616 30 1 -1.4806 -8.2330 2.9810 31 1 1.5536 -5.7633 -0.0130 32 1 2.6982 -3.7016 -0.7003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260623867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:38 Heat of formation + Delta-G solvation = 29.485469 kcal Electronic energy + Delta-G solvation = -13961.916576 eV Core-core repulsion = 11694.016443 eV Total energy + Delta-G solvation = -2267.900134 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.42519 -36.70809 -34.07731 -32.69592 -29.44347 -29.31970 -26.11272 -23.74335 -22.00947 -21.13774 -20.66471 -19.19261 -17.34711 -15.72315 -15.43120 -15.08019 -14.54359 -13.85656 -13.58032 -13.35450 -12.75499 -12.29039 -11.96000 -11.73543 -11.33202 -11.23843 -11.07406 -10.89936 -10.62252 -10.46348 -9.97431 -9.81000 -9.69755 -9.42731 -9.12219 -8.19957 -7.49521 -7.32582 -6.81100 -4.38206 2.71655 3.01871 3.04393 3.07567 3.16894 3.89696 4.17961 4.54788 5.03517 5.19901 5.34427 5.53889 5.65769 5.91793 5.94559 6.06777 6.12978 6.26395 6.29519 6.34112 6.43690 6.69082 6.89563 7.02937 7.23887 7.30801 7.54645 7.62668 7.84146 7.92197 8.01446 8.11534 8.26116 8.59684 8.85649 8.93675 10.13629 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.055830 B = 0.006590 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.399594 B = 4247.827116 C = 4418.429448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.110 3.890 10 C -0.164 4.164 11 C -0.097 4.097 12 C -0.244 4.244 13 C 0.180 3.820 14 H 0.067 0.933 15 N -0.841 5.841 16 C -0.130 4.130 17 C -0.182 4.182 18 C -0.172 4.172 19 C -0.080 4.080 20 C -0.227 4.227 21 H 0.280 0.720 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.336 0.664 25 H 0.338 0.662 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -5.995 3.539 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.108 3.892 10 C -0.184 4.184 11 C -0.116 4.116 12 C -0.247 4.247 13 C 0.069 3.931 14 H 0.085 0.915 15 N -0.368 5.368 16 C -0.149 4.149 17 C -0.219 4.219 18 C -0.209 4.209 19 C -0.099 4.099 20 C -0.247 4.247 21 H 0.091 0.909 22 H 0.134 0.866 23 H 0.102 0.898 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.302 -6.595 3.789 7.717 hybrid contribution 0.665 1.861 -0.412 2.019 sum -0.637 -4.734 3.377 5.850 Atomic orbital electron populations 1.69828 1.07636 1.29260 1.35060 1.25919 0.94703 1.01360 0.92159 0.86339 0.80712 0.80599 0.79258 1.19462 1.20059 1.18432 1.19594 0.98383 0.91420 1.39852 0.90475 1.17628 0.91079 0.92013 0.88491 1.21278 0.99389 0.96711 1.00978 1.20400 0.98600 0.92816 0.99768 1.19780 1.02147 0.94075 1.08649 1.19554 0.86217 0.94434 0.92898 0.91513 1.59152 1.12797 1.51638 1.13255 1.22324 1.03140 0.91343 0.98062 1.22892 0.93906 1.02248 1.02895 1.22775 0.95688 1.02325 1.00094 1.20362 0.95456 0.96300 0.97799 1.20972 1.03801 0.92919 1.06985 0.90862 0.86579 0.89813 0.85152 0.85075 0.88441 0.89269 0.89439 0.89844 0.88704 0.89637 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.98 55.55 0.61 -19.81 16 2 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.11 2.94 5.58 -106.82 -0.60 2.35 16 10 C -0.16 -4.23 8.70 -38.87 -0.34 -4.57 16 11 C -0.10 -2.20 9.26 -39.66 -0.37 -2.57 16 12 C -0.24 -5.16 4.95 -104.33 -0.52 -5.68 16 13 C 0.18 3.16 3.17 -68.86 -0.22 2.94 16 14 H 0.07 1.17 7.75 -51.93 -0.40 0.77 16 15 N -0.84 -13.51 8.94 -5.65 -0.05 -13.56 16 16 C -0.13 -2.10 5.31 -90.62 -0.48 -2.58 16 17 C -0.18 -2.56 10.17 -26.75 -0.27 -2.83 16 18 C -0.17 -2.36 10.12 -26.76 -0.27 -2.63 16 19 C -0.08 -1.79 9.64 -39.66 -0.38 -2.18 16 20 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 21 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 22 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 23 H 0.08 1.71 6.64 -52.48 -0.35 1.36 16 24 H 0.34 5.35 7.32 -39.29 -0.29 5.06 16 25 H 0.34 5.32 9.06 -39.29 -0.36 4.97 16 26 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 27 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.70 8.03 -52.49 -0.42 1.28 16 32 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -26.49 271.52 -8.85 -35.34 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -4.22 Total: 14.94 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -4.25 Total: -34.55 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.56 Total: -33.36 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.49 -8.85 -35.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.828 kcal (2) G-P(sol) polarization free energy of solvation -26.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds