Wall clock time and date at job start Mon Mar 30 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47393 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47138 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.47011 * 149.99852 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00264 * 161.48608 * 7 2 1 9 9 C 1.41396 * 119.99798 * 341.48674 * 7 2 1 10 10 C 1.40714 * 120.24654 * 335.88232 * 9 7 2 11 11 C 1.37617 * 119.74228 * 179.78990 * 10 9 7 12 12 C 1.38638 * 120.25160 * 0.48806 * 11 10 9 13 13 C 1.50697 * 119.74978 * 179.76375 * 12 11 10 14 14 H 1.09005 * 109.47166 * 159.97987 * 13 12 11 15 15 N 1.46898 * 109.47492 * 39.97736 * 13 12 11 16 16 C 1.53008 * 109.47188 * 279.97916 * 13 12 11 17 17 C 1.53001 * 117.49483 * 248.62538 * 16 13 12 18 18 C 1.52996 * 117.49904 * 180.02562 * 16 13 12 19 19 C 1.38638 * 120.49817 * 359.74126 * 12 11 10 20 20 C 1.37617 * 120.24886 * 0.02562 * 19 12 11 21 21 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.12648 * 0.02562 * 10 9 7 23 23 H 1.08004 * 119.87711 * 180.23011 * 11 10 9 24 24 H 1.00901 * 111.00046 * 300.00024 * 15 13 12 25 25 H 1.00905 * 110.99618 * 63.95148 * 15 13 12 26 26 H 1.08996 * 115.54600 * 34.33203 * 16 13 12 27 27 H 1.08996 * 117.50268 * 359.97438 * 17 16 13 28 28 H 1.09002 * 117.49175 * 145.02211 * 17 16 13 29 29 H 1.09000 * 117.49990 * 214.97705 * 18 16 13 30 30 H 1.08996 * 117.49745 * 359.97438 * 18 16 13 31 31 H 1.07996 * 119.87031 * 179.97438 * 19 12 11 32 32 H 1.08002 * 120.12491 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0462 -1.2363 -0.2964 9 6 1.3560 -2.4046 0.3899 10 6 0.2297 -2.3542 1.2319 11 6 -0.3996 -3.5211 1.6009 12 6 0.0781 -4.7436 1.1545 13 6 -0.6166 -6.0148 1.5698 14 1 -0.3550 -6.8148 0.8772 15 7 -2.0707 -5.8069 1.5511 16 6 -0.1746 -6.3991 2.9834 17 6 0.6889 -7.6528 3.1371 18 6 -0.7722 -7.6706 3.5892 19 6 1.1898 -4.8055 0.3285 20 6 1.8321 -3.6511 -0.0571 21 1 -0.4850 0.8400 0.0004 22 1 -0.1417 -1.4033 1.5841 23 1 -1.2665 -3.4847 2.2441 24 1 -2.3387 -5.0695 2.1856 25 1 -2.3964 -5.6151 0.6156 26 1 0.0235 -5.5654 3.6569 27 1 0.9417 -8.2040 2.2314 28 1 1.4554 -7.6439 3.9120 29 1 -0.9673 -7.6735 4.6616 30 1 -1.4806 -8.2330 2.9810 31 1 1.5536 -5.7633 -0.0130 32 1 2.6982 -3.7016 -0.7003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:38 Heat of formation + Delta-G solvation = 14.957342 kcal Electronic energy + Delta-G solvation = -13962.546563 eV Core-core repulsion = 11694.016443 eV Total energy + Delta-G solvation = -2268.530121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03203 -38.20617 -35.77359 -34.25146 -31.23754 -31.16500 -27.80376 -25.34970 -23.14126 -22.90561 -22.32277 -20.67992 -19.25622 -17.40969 -16.77836 -16.61183 -16.05413 -15.54679 -15.21998 -14.75536 -14.46845 -13.95075 -13.68776 -13.43280 -13.06683 -12.73942 -12.64104 -12.28822 -12.23622 -11.95793 -11.64098 -11.29434 -11.12551 -11.00352 -10.86791 -9.64094 -9.36083 -9.18143 -8.67162 -6.35058 0.93112 1.11456 1.35813 1.46294 1.52434 2.18554 2.68183 3.02987 3.66635 3.82492 3.99067 4.14178 4.29393 4.40133 4.46514 4.62699 4.73134 4.86108 4.87845 5.01664 5.11804 5.13838 5.30095 5.37372 5.43432 5.47315 5.68037 5.93777 6.07514 6.11295 6.37212 6.38363 6.64073 6.68404 6.91965 7.01565 8.30032 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.055830 B = 0.006590 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.399594 B = 4247.827116 C = 4418.429448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.189 4.189 11 C -0.097 4.097 12 C -0.228 4.228 13 C 0.187 3.813 14 H 0.074 0.926 15 N -0.832 5.832 16 C -0.155 4.155 17 C -0.175 4.175 18 C -0.152 4.152 19 C -0.086 4.086 20 C -0.244 4.244 21 H 0.288 0.712 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.338 0.662 25 H 0.340 0.660 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -7.172 4.119 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.116 4.116 12 C -0.230 4.230 13 C 0.075 3.925 14 H 0.092 0.908 15 N -0.359 5.359 16 C -0.173 4.173 17 C -0.213 4.213 18 C -0.189 4.189 19 C -0.104 4.104 20 C -0.264 4.264 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.122 0.878 24 H 0.150 0.850 25 H 0.152 0.848 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.552 -7.792 4.369 9.067 hybrid contribution 0.673 2.060 -0.568 2.240 sum -0.879 -5.732 3.801 6.934 Atomic orbital electron populations 1.69875 1.09011 1.30557 1.35681 1.26752 0.95483 1.04504 0.91148 0.85228 0.79120 0.75943 0.79574 1.18578 1.18927 1.18401 1.19829 0.98562 0.92817 1.42133 0.90910 1.17983 0.92072 0.93049 0.89521 1.21254 1.00273 0.97145 1.02193 1.20626 0.98892 0.92497 0.99580 1.20278 1.01098 0.95304 1.06353 1.19530 0.86458 0.92402 0.94059 0.90810 1.59159 1.11635 1.51603 1.13492 1.22168 1.06036 0.92129 0.97011 1.23012 0.94474 1.00259 1.03539 1.22811 0.95536 0.99666 1.00901 1.20715 0.95456 0.96730 0.97517 1.21179 1.04406 0.93305 1.07514 0.90137 0.88387 0.87754 0.84956 0.84792 0.89965 0.88582 0.88372 0.88345 0.88402 0.86798 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.68 10.98 21.83 0.24 -43.44 16 2 C 0.04 1.84 5.13 85.26 0.44 2.28 16 3 Si 0.98 38.64 29.60 68.60 2.03 40.67 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.83 9.05 23.46 0.21 -27.62 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.08 4.19 5.58 -21.29 -0.12 4.07 16 10 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 11 C -0.10 -4.39 9.26 22.22 0.21 -4.19 16 12 C -0.23 -9.35 4.95 -19.67 -0.10 -9.45 16 13 C 0.19 6.10 3.17 44.17 0.14 6.24 16 14 H 0.07 2.35 7.75 -2.38 -0.02 2.33 16 15 N -0.83 -24.69 8.94 -171.79 -1.54 -26.22 16 16 C -0.15 -4.60 5.31 -10.79 -0.06 -4.66 16 17 C -0.18 -4.36 10.17 30.58 0.31 -4.05 16 18 C -0.15 -3.66 10.12 30.58 0.31 -3.35 16 19 C -0.09 -3.74 9.64 22.22 0.21 -3.52 16 20 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 21 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 22 H 0.10 5.46 6.16 -2.91 -0.02 5.45 16 23 H 0.10 4.18 6.64 -2.91 -0.02 4.16 16 24 H 0.34 10.02 7.32 -89.69 -0.66 9.36 16 25 H 0.34 9.95 9.06 -89.69 -0.81 9.13 16 26 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 27 H 0.10 2.27 8.05 -2.39 -0.02 2.25 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.11 4.27 8.03 -2.91 -0.02 4.25 16 32 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -57.66 271.52 2.37 -55.29 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.34 Total: 39.80 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 1.98 Total: -66.11 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.30 Total: -69.66 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -57.66 2.37 -55.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.249 kcal (2) G-P(sol) polarization free energy of solvation -57.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds