Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 120.00306 * 2 1 4 4 C 1.38215 * 120.00292 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99775 * 359.81407 * 5 4 3 7 7 C 1.38217 * 119.99763 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99926 * 359.97438 * 7 2 1 9 9 C 1.50706 * 112.74087 * 290.32452 * 8 7 2 10 10 H 1.08000 * 119.99302 * 128.73742 * 9 8 7 11 11 C 1.37871 * 120.00436 * 308.46275 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.53510 * 113.53383 * 61.14524 * 8 7 2 18 18 C 1.53510 * 83.57479 * 140.80022 * 17 8 7 19 19 N 1.47477 * 113.47830 * 159.55955 * 8 7 2 20 20 H 1.09007 * 109.47094 * 269.98298 * 1 2 3 21 21 H 1.09000 * 109.46935 * 29.97505 * 1 2 3 22 22 H 1.09000 * 109.47288 * 149.97940 * 1 2 3 23 23 H 1.08002 * 119.99845 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.00651 * 180.02562 * 4 3 2 25 25 H 1.07998 * 120.00134 * 180.02562 * 5 4 3 26 26 H 1.07995 * 119.99688 * 180.22473 * 6 5 4 27 27 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08996 * 114.17322 * 254.44657 * 17 8 7 29 29 H 1.08998 * 114.16734 * 27.15938 * 17 8 7 30 30 H 1.08996 * 113.48173 * 219.21235 * 18 17 8 31 31 H 1.09001 * 113.47743 * 88.74087 * 18 17 8 32 32 H 1.00902 * 110.99996 * 106.46186 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0060 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 0.7356 -2.7655 1.3031 10 1 -0.3129 -3.0244 1.3047 11 6 1.4268 -2.6815 2.4930 12 7 2.7051 -2.3720 2.4904 13 14 0.5483 -3.0087 4.1087 14 1 -0.8754 -3.3348 3.8407 15 1 1.1963 -4.1508 4.8021 16 1 0.6256 -1.7998 4.9677 17 6 0.5493 -2.6930 -1.2329 18 6 1.0360 -4.1464 -1.1473 19 7 2.2481 -3.6446 -0.4735 20 1 -0.3634 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6583 2.1326 0.0004 24 1 4.1206 2.1325 0.0010 25 1 5.3517 -0.0001 0.0024 26 1 4.1206 -2.1323 0.0105 27 1 3.1916 -2.3133 3.3276 28 1 -0.5151 -2.5665 -1.0353 29 1 0.8912 -2.1594 -2.1198 30 1 1.2347 -4.5959 -2.1202 31 1 0.4143 -4.7758 -0.5105 32 1 2.5100 -4.2449 0.2941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = 53.978430 kcal Electronic energy + Delta-G solvation = -15028.483792 eV Core-core repulsion = 12761.645753 eV Total energy + Delta-G solvation = -2266.838039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33437 -37.15054 -32.50345 -31.75256 -29.85193 -26.59267 -26.33350 -25.56638 -23.24576 -20.94727 -19.89525 -18.54911 -16.82741 -15.57320 -14.82893 -14.37753 -14.17061 -14.02731 -13.14840 -12.76552 -12.34547 -12.01780 -11.90915 -11.37879 -11.10527 -11.08049 -10.97956 -10.73150 -10.56799 -10.38722 -10.07160 -9.86180 -9.48347 -9.14853 -8.62608 -7.65601 -7.55727 -7.29534 -6.06740 -4.28431 2.57053 2.67913 3.20526 3.30257 3.32069 4.29703 5.00755 5.12160 5.51593 5.72477 5.83534 5.98203 6.08612 6.11611 6.22328 6.37020 6.44817 6.63926 6.65112 6.68950 6.81685 6.89745 6.98265 7.03822 7.24810 7.28690 7.50389 7.57943 7.69695 7.79356 7.99045 8.17011 8.26503 8.66991 8.83193 9.40869 10.88337 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.014883 C = 0.012366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.755044 B = 1880.942626 C = 2263.772183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.054 4.054 7 C 0.011 3.989 8 C 0.235 3.765 9 C -0.534 4.534 10 H 0.063 0.937 11 C 0.079 3.921 12 N -0.859 5.859 13 Si 0.889 3.111 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.148 4.148 18 C 0.012 3.988 19 N -0.640 5.640 20 H 0.063 0.937 21 H 0.039 0.961 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 2.148 -3.952 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 C -0.160 4.160 4 C -0.167 4.167 5 C -0.166 4.166 6 C -0.072 4.072 7 C 0.010 3.990 8 C 0.146 3.854 9 C -0.574 4.574 10 H 0.081 0.919 11 C -0.128 4.128 12 N -0.494 5.494 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.186 4.186 18 C -0.119 4.119 19 N -0.264 5.264 20 H 0.082 0.918 21 H 0.058 0.942 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.836 2.451 -4.450 5.149 hybrid contribution -0.872 -0.383 1.982 2.199 sum -1.708 2.068 -2.469 3.646 Atomic orbital electron populations 1.20817 0.92490 1.01124 1.01892 1.19519 0.95493 0.92611 1.01131 1.20668 0.94047 0.96612 1.04684 1.20696 0.94207 0.96917 1.04838 1.20919 0.98406 0.93262 1.04016 1.20724 0.94191 0.96661 0.95617 1.19568 0.93074 0.93906 0.92412 1.18793 0.88011 0.87091 0.91521 1.21070 0.96573 1.50087 0.89624 0.91896 1.24995 0.94882 0.93875 0.99015 1.70020 1.07420 1.45032 1.26888 0.86577 0.79976 0.77957 0.83810 1.19701 1.20950 1.20875 1.23339 0.99179 0.96594 0.99443 1.23113 0.94299 0.96154 0.98370 1.67376 1.24626 1.08938 1.25497 0.91804 0.94221 0.90627 0.88128 0.88287 0.88221 0.86588 0.92725 0.91918 0.91392 0.92636 0.92680 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 8.95 36.01 0.32 -1.79 16 2 C -0.09 -1.94 5.80 -104.62 -0.61 -2.54 16 3 C -0.14 -2.92 9.70 -39.59 -0.38 -3.30 16 4 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 5 C -0.15 -3.14 10.05 -39.58 -0.40 -3.53 16 6 C -0.05 -1.26 8.18 -39.58 -0.32 -1.59 16 7 C 0.01 0.27 3.79 -104.62 -0.40 -0.12 16 8 C 0.24 5.50 0.45 -137.63 -0.06 5.44 16 9 C -0.53 -13.45 7.01 -34.44 -0.24 -13.69 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.08 2.04 5.33 -17.82 -0.09 1.94 16 12 N -0.86 -22.96 11.12 55.43 0.62 -22.34 16 13 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.15 -3.02 5.72 -26.20 -0.15 -3.17 16 18 C 0.01 0.23 8.28 -7.55 -0.06 0.17 16 19 N -0.64 -14.50 7.37 -110.92 -0.82 -15.32 16 20 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 21 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 22 H 0.08 1.48 4.23 -51.93 -0.22 1.26 16 23 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 25 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.12 2.84 7.37 -52.49 -0.39 2.46 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 28 H 0.06 1.22 6.96 -51.93 -0.36 0.86 16 29 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.09 7.99 -51.93 -0.41 0.68 16 32 H 0.32 7.65 8.55 -39.29 -0.34 7.32 16 LS Contribution 260.51 15.07 3.93 3.93 Total: -1.00 -26.72 260.51 -8.31 -35.02 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.22 Total: 8.93 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -2.79 Total: -25.57 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.20 Total: -37.65 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.72 -8.31 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.003 kcal (2) G-P(sol) polarization free energy of solvation -26.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds