Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 120.00306 * 2 1 4 4 C 1.38215 * 120.00292 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99775 * 359.81407 * 5 4 3 7 7 C 1.38217 * 119.99763 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99926 * 359.97438 * 7 2 1 9 9 C 1.50706 * 112.74087 * 290.32452 * 8 7 2 10 10 H 1.08000 * 119.99302 * 128.73742 * 9 8 7 11 11 C 1.37871 * 120.00436 * 308.46275 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.53510 * 113.53383 * 61.14524 * 8 7 2 18 18 C 1.53510 * 83.57479 * 140.80022 * 17 8 7 19 19 N 1.47477 * 113.47830 * 159.55955 * 8 7 2 20 20 H 1.09007 * 109.47094 * 269.98298 * 1 2 3 21 21 H 1.09000 * 109.46935 * 29.97505 * 1 2 3 22 22 H 1.09000 * 109.47288 * 149.97940 * 1 2 3 23 23 H 1.08002 * 119.99845 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.00651 * 180.02562 * 4 3 2 25 25 H 1.07998 * 120.00134 * 180.02562 * 5 4 3 26 26 H 1.07995 * 119.99688 * 180.22473 * 6 5 4 27 27 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08996 * 114.17322 * 254.44657 * 17 8 7 29 29 H 1.08998 * 114.16734 * 27.15938 * 17 8 7 30 30 H 1.08996 * 113.48173 * 219.21235 * 18 17 8 31 31 H 1.09001 * 113.47743 * 88.74087 * 18 17 8 32 32 H 1.00902 * 110.99996 * 106.46186 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0060 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 0.7356 -2.7655 1.3031 10 1 -0.3129 -3.0244 1.3047 11 6 1.4268 -2.6815 2.4930 12 7 2.7051 -2.3720 2.4904 13 14 0.5483 -3.0087 4.1087 14 1 -0.8754 -3.3348 3.8407 15 1 1.1963 -4.1508 4.8021 16 1 0.6256 -1.7998 4.9677 17 6 0.5493 -2.6930 -1.2329 18 6 1.0360 -4.1464 -1.1473 19 7 2.2481 -3.6446 -0.4735 20 1 -0.3634 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6583 2.1326 0.0004 24 1 4.1206 2.1325 0.0010 25 1 5.3517 -0.0001 0.0024 26 1 4.1206 -2.1323 0.0105 27 1 3.1916 -2.3133 3.3276 28 1 -0.5151 -2.5665 -1.0353 29 1 0.8912 -2.1594 -2.1198 30 1 1.2347 -4.5959 -2.1202 31 1 0.4143 -4.7758 -0.5105 32 1 2.5100 -4.2449 0.2941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = 38.432468 kcal Electronic energy + Delta-G solvation = -15029.157915 eV Core-core repulsion = 12761.645753 eV Total energy + Delta-G solvation = -2267.512163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02637 -38.79881 -34.42051 -33.38132 -31.51729 -28.30933 -28.11075 -27.23815 -24.98624 -22.59647 -21.51580 -20.33282 -18.61701 -17.24486 -16.68227 -16.13624 -15.81860 -15.69464 -14.79722 -14.41628 -14.10124 -13.65425 -13.61899 -12.99680 -12.89886 -12.78686 -12.67810 -12.37095 -12.28536 -12.17343 -11.76623 -11.56223 -11.18817 -10.92243 -10.47802 -9.41386 -9.23748 -8.98341 -7.98875 -6.26632 0.90508 1.02990 1.37458 1.42735 1.50210 2.40104 3.16291 3.34556 3.84081 4.06266 4.31869 4.40614 4.46163 4.54937 4.65613 4.79953 4.87664 5.03345 5.06545 5.07895 5.20619 5.26194 5.33986 5.35457 5.57585 5.65123 5.73915 5.83385 5.93275 6.02471 6.22001 6.44584 6.58407 6.76177 6.97787 7.43961 8.91868 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.014883 C = 0.012366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.755044 B = 1880.942626 C = 2263.772183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.108 4.108 3 C -0.145 4.145 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.012 4.012 8 C 0.223 3.777 9 C -0.535 4.535 10 H 0.057 0.943 11 C 0.039 3.961 12 N -0.880 5.880 13 Si 0.941 3.059 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.289 1.289 17 C -0.137 4.137 18 C 0.016 3.984 19 N -0.647 5.647 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.257 0.743 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 3.246 -4.389 5.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.163 4.163 4 C -0.165 4.165 5 C -0.174 4.174 6 C -0.095 4.095 7 C -0.013 4.013 8 C 0.133 3.867 9 C -0.574 4.574 10 H 0.075 0.925 11 C -0.165 4.165 12 N -0.516 5.516 13 Si 0.768 3.232 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.215 1.215 17 C -0.175 4.175 18 C -0.114 4.114 19 N -0.271 5.271 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.149 0.851 24 H 0.152 0.848 25 H 0.137 0.863 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.550 3.543 -4.902 6.244 hybrid contribution -0.636 -0.700 2.077 2.282 sum -2.186 2.843 -2.826 4.565 Atomic orbital electron populations 1.20785 0.91108 1.02530 1.01406 1.19895 0.96830 0.92794 1.01358 1.21080 0.94586 0.97263 1.03389 1.21101 0.94395 0.97787 1.03240 1.21204 0.99622 0.93082 1.03514 1.20683 0.94519 0.96751 0.97543 1.19744 0.93360 0.94677 0.93557 1.18872 0.88679 0.87301 0.91802 1.21242 0.96261 1.49238 0.90674 0.92467 1.25560 0.95387 0.94122 1.01413 1.70158 1.08334 1.46271 1.26841 0.85764 0.79277 0.77292 0.80824 1.19156 1.21037 1.21499 1.23261 0.99250 0.96698 0.98283 1.23165 0.93059 0.96118 0.99090 1.67418 1.25816 1.08939 1.24943 0.93083 0.91182 0.90920 0.85129 0.84800 0.86265 0.88829 0.93346 0.90947 0.90972 0.90360 0.92696 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.84 8.95 71.24 0.64 -3.21 16 2 C -0.11 -4.66 5.80 -19.87 -0.12 -4.78 16 3 C -0.15 -5.58 9.70 22.27 0.22 -5.37 16 4 C -0.15 -5.52 10.05 22.27 0.22 -5.29 16 5 C -0.16 -6.46 10.05 22.27 0.22 -6.23 16 6 C -0.08 -3.63 8.18 22.27 0.18 -3.45 16 7 C -0.01 -0.59 3.79 -19.86 -0.08 -0.66 16 8 C 0.22 10.39 0.45 -0.69 0.00 10.39 16 9 C -0.53 -26.86 7.01 25.60 0.18 -26.68 16 10 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 11 C 0.04 2.02 5.33 84.65 0.45 2.48 16 12 N -0.88 -47.68 11.12 21.45 0.24 -47.45 16 13 Si 0.94 41.93 29.54 68.60 2.03 43.95 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 17 C -0.14 -5.45 5.72 30.94 0.18 -5.28 16 18 C 0.02 0.63 8.28 83.57 0.69 1.32 16 19 N -0.65 -29.50 7.37 -504.84 -3.72 -33.22 16 20 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 21 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 22 H 0.07 2.74 4.23 -2.39 -0.01 2.73 16 23 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 24 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 25 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 26 H 0.09 4.75 7.37 -2.91 -0.02 4.73 16 27 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.07 2.71 6.96 -2.39 -0.02 2.69 16 29 H 0.07 2.78 8.11 -2.39 -0.02 2.77 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.05 2.12 7.99 -2.39 -0.02 2.10 16 32 H 0.31 14.99 8.55 -89.69 -0.77 14.22 16 Total: -1.00 -56.06 260.51 1.68 -54.38 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.35 Total: 29.10 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 2.79 Total: -46.76 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.48 Total: -80.67 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -56.06 1.68 -54.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.808 kcal (2) G-P(sol) polarization free energy of solvation -56.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds