Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 120.08313 * 2 1 4 4 C 1.38023 * 119.86703 * 179.90925 * 3 2 1 5 5 C 1.38731 * 120.37799 * 359.96969 * 4 3 2 6 6 C 1.37835 * 119.72490 * 0.13224 * 5 4 3 7 7 C 1.38029 * 120.09014 * 179.97438 * 2 1 3 8 8 C 1.50714 * 121.66407 * 179.69860 * 6 5 4 9 9 H 1.08997 * 109.39465 * 256.76557 * 8 6 5 10 10 C 1.50694 * 109.39168 * 137.05696 * 8 6 5 11 11 H 1.07998 * 119.99992 * 0.02562 * 10 8 6 12 12 C 1.37879 * 120.00245 * 179.97438 * 10 8 6 13 13 N 1.31511 * 119.99564 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00129 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47278 * 90.00118 * 14 12 10 16 16 H 1.48507 * 109.47128 * 210.00280 * 14 12 10 17 17 H 1.48501 * 109.46994 * 330.00001 * 14 12 10 18 18 C 1.52904 * 109.95116 * 16.91248 * 8 6 5 19 19 N 1.47160 * 108.50153 * 309.59069 * 18 8 6 20 20 C 1.46645 * 110.24740 * 71.27521 * 19 18 8 21 21 H 1.08999 * 109.47353 * 89.99853 * 1 2 3 22 22 H 1.09002 * 109.47354 * 209.99937 * 1 2 3 23 23 H 1.08997 * 109.47479 * 329.99801 * 1 2 3 24 24 H 1.07997 * 120.06783 * 359.64067 * 3 2 1 25 25 H 1.08003 * 119.80821 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.82258 * 0.06231 * 7 2 1 27 27 H 0.97007 * 119.99651 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.63588 * 69.30237 * 18 8 6 29 29 H 1.09006 * 109.62551 * 189.89173 * 18 8 6 30 30 H 1.00897 * 111.00763 * 307.85448 * 19 18 8 31 31 H 1.09000 * 109.27109 * 67.74491 * 20 19 18 32 32 H 1.08998 * 109.26889 * 187.25613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1964 0.0000 4 6 3.5802 1.1912 0.0019 5 6 4.2773 -0.0083 0.0044 6 6 3.5858 -1.2006 0.0023 7 6 2.1990 -1.1943 0.0005 8 6 4.2985 -2.5286 -0.0018 9 1 4.2611 -2.9563 -1.0037 10 6 3.6194 -3.4639 0.9651 11 1 2.7586 -3.1299 1.5252 12 6 4.0964 -4.7465 1.1339 13 7 5.1444 -5.1533 0.4514 14 14 3.2542 -5.9061 2.3319 15 1 2.1895 -6.6614 1.6242 16 1 4.2519 -6.8572 2.8846 17 1 2.6518 -5.1216 3.4396 18 6 5.7573 -2.3390 0.4150 19 7 6.3379 -1.2569 -0.3959 20 6 5.7828 0.0374 0.0128 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6625 2.1331 -0.0059 25 1 4.1206 2.1263 0.0015 26 1 1.6575 -2.1288 -0.0001 27 1 5.4802 -6.0556 0.5705 28 1 5.8049 -2.0716 1.4706 29 1 6.3102 -3.2626 0.2430 30 1 6.1862 -1.4210 -1.3798 31 1 6.1300 0.2765 1.0179 32 1 6.1226 0.8088 -0.6782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = 9.936317 kcal Electronic energy + Delta-G solvation = -14491.121943 eV Core-core repulsion = 12222.374095 eV Total energy + Delta-G solvation = -2268.747849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41732 -36.12668 -33.44525 -31.65666 -31.07046 -28.34363 -26.71096 -24.83758 -22.52007 -22.03013 -21.02593 -18.69106 -16.38491 -15.55040 -15.32575 -14.72511 -14.33244 -13.83125 -13.41158 -13.15644 -12.74115 -12.54552 -12.48371 -11.96078 -11.72325 -11.07175 -11.00424 -10.88884 -10.76112 -10.62659 -10.44848 -10.06587 -9.48840 -9.40574 -8.53584 -7.97491 -7.69926 -7.49764 -6.09567 -4.13933 1.97727 2.13092 3.25990 3.33355 3.36920 4.32999 4.44024 5.17907 5.27194 5.34006 5.41492 5.58924 5.63336 5.79378 5.89319 5.96088 6.08822 6.14768 6.23310 6.45060 6.65216 6.67309 6.82002 6.95038 7.07394 7.22912 7.41244 7.46652 7.66578 7.73768 7.91915 7.95713 8.23274 8.34928 8.87315 9.49884 10.97416 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.011397 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.661406 B = 2456.158106 C = 3357.517293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.140 4.140 6 C -0.033 4.033 7 C -0.107 4.107 8 C 0.044 3.956 9 H 0.042 0.958 10 C -0.510 4.510 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.063 3.937 19 N -0.692 5.692 20 C 0.101 3.899 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.332 0.668 31 H 0.073 0.927 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 8.868 -1.437 9.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.163 4.163 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.033 4.033 7 C -0.125 4.125 8 C 0.025 3.975 9 H 0.060 0.940 10 C -0.549 4.549 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.065 4.065 19 N -0.318 5.318 20 C -0.030 4.030 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.126 0.874 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.994 8.753 -1.057 9.311 hybrid contribution -1.479 -0.667 0.354 1.660 sum -4.473 8.086 -0.703 9.267 Atomic orbital electron populations 1.20706 0.92134 1.02051 1.01539 1.19843 0.95421 0.93592 1.01406 1.20706 0.94130 0.96777 1.04664 1.20909 0.94058 0.96996 1.01966 1.20611 0.97678 0.93006 1.02834 1.20349 0.93755 0.95831 0.93352 1.21158 0.94308 0.97078 0.99966 1.18438 0.93163 0.87802 0.98110 0.94036 1.21090 1.13887 0.96349 1.23556 0.92211 1.24973 0.95009 0.97995 0.95895 1.69864 1.23453 1.18326 1.41061 0.86546 0.79251 0.80682 0.81313 1.20652 1.21104 1.19884 1.22314 0.95264 0.93409 0.95495 1.61252 1.59388 1.02547 1.08596 1.20825 0.87957 0.93288 1.00903 0.91916 0.91818 0.92349 0.87375 0.87227 0.85719 0.92740 0.92975 0.87649 0.85258 0.90876 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.02 36.00 0.36 -1.14 16 2 C -0.10 -1.82 5.88 -104.69 -0.62 -2.43 16 3 C -0.14 -2.40 9.71 -39.65 -0.38 -2.79 16 4 C -0.12 -2.07 9.65 -39.48 -0.38 -2.45 16 5 C -0.14 -2.73 5.79 -104.63 -0.61 -3.34 16 6 C -0.03 -0.72 5.44 -104.60 -0.57 -1.29 16 7 C -0.11 -2.22 8.40 -39.50 -0.33 -2.56 16 8 C 0.04 1.09 2.27 -92.97 -0.21 0.88 16 9 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 10 C -0.51 -13.63 7.79 -34.44 -0.27 -13.90 16 11 H 0.06 1.60 6.77 -52.49 -0.36 1.25 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -24.55 11.41 55.43 0.63 -23.92 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.06 1.50 5.51 -3.73 -0.02 1.48 16 19 N -0.69 -13.92 6.96 -115.15 -0.80 -14.72 16 20 C 0.10 1.82 6.34 -5.15 -0.03 1.79 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 25 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 26 H 0.12 2.66 7.15 -52.49 -0.38 2.28 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.05 1.29 8.02 -51.93 -0.42 0.88 16 29 H 0.11 2.75 6.37 -51.93 -0.33 2.42 16 30 H 0.33 6.42 8.74 -39.29 -0.34 6.08 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -27.49 261.53 -8.74 -36.22 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.33 Total: 6.72 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -3.15 Total: -24.15 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.17 Total: -38.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.49 -8.74 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.161 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds