Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 120.08313 * 2 1 4 4 C 1.38023 * 119.86703 * 179.90925 * 3 2 1 5 5 C 1.38731 * 120.37799 * 359.96969 * 4 3 2 6 6 C 1.37835 * 119.72490 * 0.13224 * 5 4 3 7 7 C 1.38029 * 120.09014 * 179.97438 * 2 1 3 8 8 C 1.50714 * 121.66407 * 179.69860 * 6 5 4 9 9 H 1.08997 * 109.39465 * 256.76557 * 8 6 5 10 10 C 1.50694 * 109.39168 * 137.05696 * 8 6 5 11 11 H 1.07998 * 119.99992 * 0.02562 * 10 8 6 12 12 C 1.37879 * 120.00245 * 179.97438 * 10 8 6 13 13 N 1.31511 * 119.99564 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00129 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47278 * 90.00118 * 14 12 10 16 16 H 1.48507 * 109.47128 * 210.00280 * 14 12 10 17 17 H 1.48501 * 109.46994 * 330.00001 * 14 12 10 18 18 C 1.52904 * 109.95116 * 16.91248 * 8 6 5 19 19 N 1.47160 * 108.50153 * 309.59069 * 18 8 6 20 20 C 1.46645 * 110.24740 * 71.27521 * 19 18 8 21 21 H 1.08999 * 109.47353 * 89.99853 * 1 2 3 22 22 H 1.09002 * 109.47354 * 209.99937 * 1 2 3 23 23 H 1.08997 * 109.47479 * 329.99801 * 1 2 3 24 24 H 1.07997 * 120.06783 * 359.64067 * 3 2 1 25 25 H 1.08003 * 119.80821 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.82258 * 0.06231 * 7 2 1 27 27 H 0.97007 * 119.99651 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.63588 * 69.30237 * 18 8 6 29 29 H 1.09006 * 109.62551 * 189.89173 * 18 8 6 30 30 H 1.00897 * 111.00763 * 307.85448 * 19 18 8 31 31 H 1.09000 * 109.27109 * 67.74491 * 20 19 18 32 32 H 1.08998 * 109.26889 * 187.25613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1964 0.0000 4 6 3.5802 1.1912 0.0019 5 6 4.2773 -0.0083 0.0044 6 6 3.5858 -1.2006 0.0023 7 6 2.1990 -1.1943 0.0005 8 6 4.2985 -2.5286 -0.0018 9 1 4.2611 -2.9563 -1.0037 10 6 3.6194 -3.4639 0.9651 11 1 2.7586 -3.1299 1.5252 12 6 4.0964 -4.7465 1.1339 13 7 5.1444 -5.1533 0.4514 14 14 3.2542 -5.9061 2.3319 15 1 2.1895 -6.6614 1.6242 16 1 4.2519 -6.8572 2.8846 17 1 2.6518 -5.1216 3.4396 18 6 5.7573 -2.3390 0.4150 19 7 6.3379 -1.2569 -0.3959 20 6 5.7828 0.0374 0.0128 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6625 2.1331 -0.0059 25 1 4.1206 2.1263 0.0015 26 1 1.6575 -2.1288 -0.0001 27 1 5.4802 -6.0556 0.5705 28 1 5.8049 -2.0716 1.4706 29 1 6.3102 -3.2626 0.2430 30 1 6.1862 -1.4210 -1.3798 31 1 6.1300 0.2765 1.0179 32 1 6.1226 0.8088 -0.6782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = -6.744888 kcal Electronic energy + Delta-G solvation = -14491.845294 eV Core-core repulsion = 12222.374095 eV Total energy + Delta-G solvation = -2269.471200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94408 -37.70512 -35.31157 -33.13607 -32.76795 -29.94182 -28.20114 -26.68644 -24.07767 -23.66303 -22.61262 -20.29482 -18.42743 -17.16517 -16.85227 -16.40061 -15.98498 -15.36701 -14.92526 -14.69539 -14.39301 -14.05037 -13.96204 -13.49226 -13.11011 -12.88096 -12.70529 -12.59393 -12.33960 -12.23556 -12.03292 -11.88753 -11.45103 -11.18707 -10.56774 -9.47459 -9.26460 -9.12160 -8.15692 -6.27130 0.54322 0.66395 1.37864 1.39317 1.49334 2.38894 2.94229 3.12521 3.61787 4.04877 4.10232 4.21523 4.25262 4.46294 4.52092 4.64941 4.76280 4.83059 4.85076 4.96144 5.00358 5.07591 5.36238 5.36634 5.45227 5.60709 5.68213 5.71789 5.79612 5.99249 6.16648 6.29767 6.39198 6.56702 6.81420 7.39221 8.89797 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.011397 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.661406 B = 2456.158106 C = 3357.517293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.152 4.152 6 C -0.068 4.068 7 C -0.133 4.133 8 C 0.048 3.952 9 H 0.005 0.995 10 C -0.525 4.525 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.913 5.913 14 Si 0.955 3.045 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.272 1.272 18 C 0.081 3.919 19 N -0.687 5.687 20 C 0.101 3.899 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.336 0.664 31 H 0.076 0.924 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 11.394 -1.143 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.103 4.103 3 C -0.155 4.155 4 C -0.132 4.132 5 C -0.154 4.154 6 C -0.068 4.068 7 C -0.151 4.151 8 C 0.029 3.971 9 H 0.022 0.978 10 C -0.564 4.564 11 H 0.069 0.931 12 C -0.183 4.183 13 N -0.552 5.552 14 Si 0.781 3.219 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.196 1.196 18 C -0.048 4.048 19 N -0.313 5.313 20 C -0.029 4.029 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.167 0.833 25 H 0.166 0.834 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.008 11.291 -0.771 12.006 hybrid contribution -1.203 -1.360 0.224 1.829 sum -5.210 9.931 -0.546 11.228 Atomic orbital electron populations 1.20768 0.89471 1.03148 1.02860 1.20237 0.97466 0.92819 0.99771 1.21201 0.94219 0.97761 1.02310 1.21315 0.94640 0.97283 0.99983 1.20779 0.98395 0.93076 1.03150 1.20216 0.94503 0.95430 0.96690 1.21113 0.94066 0.97796 1.02136 1.18237 0.94017 0.89365 0.95526 0.97759 1.21346 1.13782 0.97290 1.23933 0.93104 1.25716 0.95625 0.99442 0.97474 1.69991 1.24462 1.18599 1.42188 0.85596 0.78378 0.78696 0.79271 1.20036 1.20557 1.19647 1.21868 0.94599 0.93463 0.94879 1.61170 1.59121 1.02672 1.08385 1.20977 0.87305 0.92593 1.02038 0.90375 0.92356 0.89649 0.83323 0.83413 0.87998 0.92722 0.94685 0.90587 0.84826 0.90561 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 10.02 71.23 0.71 -1.95 16 2 C -0.10 -3.43 5.88 -19.91 -0.12 -3.55 16 3 C -0.14 -3.98 9.71 22.22 0.22 -3.76 16 4 C -0.11 -3.46 9.65 22.34 0.22 -3.25 16 5 C -0.15 -5.75 5.79 -19.87 -0.12 -5.86 16 6 C -0.07 -3.07 5.44 -19.85 -0.11 -3.18 16 7 C -0.13 -5.61 8.40 22.33 0.19 -5.42 16 8 C 0.05 2.50 2.27 -12.32 -0.03 2.47 16 9 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 10 C -0.53 -29.38 7.79 25.60 0.20 -29.18 16 11 H 0.05 2.86 6.77 -2.91 -0.02 2.84 16 12 C 0.02 0.93 5.30 84.66 0.45 1.38 16 13 N -0.91 -52.50 11.41 21.45 0.24 -52.26 16 14 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.08 4.02 5.51 86.22 0.47 4.50 16 19 N -0.69 -27.80 6.96 -518.24 -3.61 -31.41 16 20 C 0.10 3.45 6.34 85.58 0.54 4.00 16 21 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 23 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 24 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 25 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 26 H 0.10 4.61 7.15 -2.91 -0.02 4.59 16 27 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 28 H 0.03 1.80 8.02 -2.39 -0.02 1.79 16 29 H 0.08 4.18 6.37 -2.38 -0.02 4.17 16 30 H 0.34 13.15 8.74 -89.70 -0.78 12.37 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 Total: -1.00 -61.81 261.53 1.62 -60.19 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.33 Total: 21.29 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.63 Total: -43.81 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.36 Total: -83.66 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.81 1.62 -60.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.444 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds