Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 120.08769 * 2 1 4 4 C 1.38013 * 119.87244 * 180.09312 * 3 2 1 5 5 C 1.38736 * 120.37824 * 0.02562 * 4 3 2 6 6 C 1.37699 * 119.75728 * 359.96681 * 5 4 3 7 7 C 1.38032 * 120.08908 * 180.02562 * 2 1 3 8 8 C 1.50718 * 121.76276 * 180.28855 * 6 5 4 9 9 H 1.08993 * 109.38939 * 103.15458 * 8 6 5 10 10 C 1.50701 * 109.39050 * 222.96296 * 8 6 5 11 11 H 1.08002 * 119.99761 * 0.18959 * 10 8 6 12 12 C 1.37871 * 119.99694 * 180.47522 * 10 8 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.52899 * 109.87066 * 343.05886 * 8 6 5 19 19 N 1.47166 * 108.49642 * 50.44407 * 18 8 6 20 20 C 1.46635 * 110.24540 * 288.70326 * 19 18 8 21 21 H 1.09000 * 109.46877 * 90.00203 * 1 2 3 22 22 H 1.08996 * 109.46824 * 210.00382 * 1 2 3 23 23 H 1.09000 * 109.46647 * 330.00033 * 1 2 3 24 24 H 1.08005 * 120.06492 * 0.06446 * 3 2 1 25 25 H 1.08003 * 119.81245 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.82441 * 359.97438 * 7 2 1 27 27 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 28 28 H 1.09005 * 109.63395 * 170.14819 * 18 8 6 29 29 H 1.09004 * 109.63311 * 290.74274 * 18 8 6 30 30 H 1.00902 * 110.99566 * 52.11582 * 19 18 8 31 31 H 1.09002 * 109.27203 * 172.74878 * 20 19 18 32 32 H 1.09002 * 109.26713 * 292.21834 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1964 0.0000 4 6 3.5803 1.1912 -0.0019 5 6 4.2774 -0.0083 -0.0044 6 6 3.5872 -1.1999 -0.0043 7 6 2.1990 -1.1943 -0.0005 8 6 4.2985 -2.5287 -0.0005 9 1 4.2605 -2.9566 1.0012 10 6 3.6198 -3.4622 -0.9695 11 1 2.7623 -3.1254 -1.5332 12 6 4.0900 -4.7480 -1.1321 13 7 5.1341 -5.1582 -0.4457 14 14 3.2440 -5.9077 -2.3274 15 1 3.2942 -5.3317 -3.6953 16 1 3.9376 -7.2207 -2.3180 17 1 1.8280 -6.0924 -1.9197 18 6 5.7575 -2.3384 -0.4162 19 7 6.3375 -1.2576 0.3969 20 6 5.7828 0.0373 -0.0103 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3632 0.8900 0.5138 24 1 1.6626 2.1331 0.0011 25 1 4.1208 2.1262 -0.0024 26 1 1.6576 -2.1288 -0.0005 27 1 5.4647 -6.0629 -0.5598 28 1 6.3104 -3.2622 -0.2456 29 1 5.8055 -2.0691 -1.4713 30 1 6.1846 -1.4232 1.3805 31 1 6.1221 0.8078 0.6821 32 1 6.1315 0.2781 -1.0146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260644808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = -6.749536 kcal Electronic energy + Delta-G solvation = -14490.982113 eV Core-core repulsion = 12221.510712 eV Total energy + Delta-G solvation = -2269.471401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94645 -37.70487 -35.30899 -33.13833 -32.76450 -29.94279 -28.19800 -26.68725 -24.07728 -23.66367 -22.61598 -20.29029 -18.42677 -17.16337 -16.85229 -16.40430 -15.98649 -15.36961 -14.90428 -14.71475 -14.39585 -14.04579 -13.94307 -13.51072 -13.10719 -12.86975 -12.70532 -12.59876 -12.33957 -12.24138 -12.01998 -11.90080 -11.44855 -11.19101 -10.56778 -9.47054 -9.26976 -9.12309 -8.15519 -6.27066 0.54511 0.66184 1.38937 1.39865 1.47829 2.39009 2.94256 3.12690 3.61665 4.04876 4.10162 4.21610 4.25315 4.46294 4.52035 4.64928 4.76765 4.81812 4.85492 4.96064 5.00312 5.07491 5.36157 5.36641 5.45111 5.60595 5.68138 5.71643 5.79551 5.98905 6.16545 6.29767 6.39178 6.56570 6.81291 7.39254 8.89906 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.011401 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.537985 B = 2455.396358 C = 3357.745205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.152 4.152 6 C -0.068 4.068 7 C -0.133 4.133 8 C 0.049 3.951 9 H 0.005 0.995 10 C -0.526 4.526 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.914 5.914 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.272 1.272 18 C 0.081 3.919 19 N -0.687 5.687 20 C 0.100 3.900 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.264 0.736 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.336 0.664 31 H 0.104 0.896 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 11.400 1.103 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.103 4.103 3 C -0.155 4.155 4 C -0.132 4.132 5 C -0.154 4.154 6 C -0.068 4.068 7 C -0.151 4.151 8 C 0.029 3.971 9 H 0.023 0.977 10 C -0.564 4.564 11 H 0.069 0.931 12 C -0.182 4.182 13 N -0.552 5.552 14 Si 0.780 3.220 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.197 1.197 18 C -0.048 4.048 19 N -0.313 5.313 20 C -0.029 4.029 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.167 0.833 25 H 0.166 0.834 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.003 11.293 0.738 12.004 hybrid contribution -1.207 -1.355 -0.248 1.832 sum -5.210 9.938 0.490 11.232 Atomic orbital electron populations 1.20769 0.89478 1.03278 1.02718 1.20240 0.97460 0.92824 0.99781 1.21200 0.94219 0.97759 1.02300 1.21313 0.94637 0.97282 0.99974 1.20740 0.98399 0.93081 1.03166 1.20220 0.94498 0.95441 0.96685 1.21153 0.94059 0.97777 1.02124 1.18232 0.93997 0.89349 0.95513 0.97749 1.21315 1.14174 0.97136 1.23816 0.93096 1.25713 0.95645 0.99432 0.97436 1.69982 1.24758 1.18448 1.42055 0.85660 0.78772 0.78070 0.79485 1.19865 1.20601 1.19698 1.21870 0.94614 0.93454 0.94867 1.61173 1.59137 1.02674 1.08359 1.20976 0.87316 0.92577 1.02054 0.90790 0.92143 0.89468 0.83318 0.83408 0.88016 0.92707 0.90655 0.94674 0.84827 0.87789 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 10.02 71.24 0.71 -1.95 16 2 C -0.10 -3.43 5.88 -19.91 -0.12 -3.55 16 3 C -0.14 -3.97 9.71 22.22 0.22 -3.75 16 4 C -0.11 -3.46 9.65 22.34 0.22 -3.24 16 5 C -0.15 -5.74 5.79 -19.90 -0.12 -5.85 16 6 C -0.07 -3.07 5.43 -19.85 -0.11 -3.18 16 7 C -0.13 -5.61 8.40 22.36 0.19 -5.42 16 8 C 0.05 2.53 2.27 -12.31 -0.03 2.50 16 9 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 10 C -0.53 -29.43 7.78 25.60 0.20 -29.23 16 11 H 0.05 2.85 6.79 -2.91 -0.02 2.83 16 12 C 0.02 0.95 5.30 84.65 0.45 1.40 16 13 N -0.91 -52.54 11.44 21.45 0.25 -52.30 16 14 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 C 0.08 4.02 5.52 86.22 0.48 4.50 16 19 N -0.69 -27.79 6.96 -518.24 -3.61 -31.40 16 20 C 0.10 3.45 6.34 85.58 0.54 3.99 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 23 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 24 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 25 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 26 H 0.10 4.61 7.16 -2.91 -0.02 4.59 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.08 4.14 6.40 -2.38 -0.02 4.13 16 29 H 0.03 1.81 8.02 -2.39 -0.02 1.79 16 30 H 0.34 13.15 8.74 -89.69 -0.78 12.37 16 31 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -61.75 261.60 1.62 -60.12 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.33 Total: 21.40 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 2.63 Total: -43.79 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -3.36 Total: -83.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.75 1.62 -60.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260644808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.374 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds