Wall clock time and date at job start Mon Mar 30 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.64190 * 2 1 4 4 C 1.53309 * 109.63895 * 120.41132 * 2 1 3 5 5 C 1.52805 * 108.50804 * 50.07141 * 4 2 1 6 6 C 1.50471 * 110.46159 * 51.09419 * 5 4 2 7 7 C 1.38757 * 118.53557 * 162.49499 * 6 5 4 8 8 N 1.31669 * 121.01811 * 179.74664 * 7 6 5 9 9 C 1.31891 * 121.63998 * 359.91194 * 8 7 6 10 10 C 1.38052 * 120.59163 * 0.10186 * 9 8 7 11 11 C 1.37836 * 122.52978 * 342.29699 * 6 5 4 12 12 C 1.50344 * 122.81407 * 0.54189 * 11 6 5 13 13 H 1.08996 * 109.30300 * 102.83071 * 12 11 6 14 14 C 1.50695 * 109.14737 * 222.33000 * 12 11 6 15 15 H 1.08002 * 119.99973 * 35.31210 * 14 12 11 16 16 C 1.37879 * 120.00504 * 215.31951 * 14 12 11 17 17 N 1.31516 * 119.99399 * 5.14155 * 16 14 12 18 18 Si 1.86794 * 120.00544 * 185.14274 * 16 14 12 19 19 H 1.48508 * 109.46806 * 89.99715 * 18 16 14 20 20 H 1.48492 * 109.47324 * 209.99598 * 18 16 14 21 21 H 1.48500 * 109.46889 * 330.00168 * 18 16 14 22 22 H 1.08998 * 109.46526 * 299.59117 * 1 2 3 23 23 H 1.08997 * 109.46890 * 59.58913 * 1 2 3 24 24 H 1.08996 * 109.46981 * 179.59402 * 1 2 3 25 25 H 1.08996 * 109.63134 * 290.36526 * 4 2 1 26 26 H 1.08999 * 109.63228 * 169.77509 * 4 2 1 27 27 H 1.08992 * 109.30441 * 290.79121 * 5 4 2 28 28 H 1.08999 * 109.14004 * 171.29432 * 5 4 2 29 29 H 1.07999 * 119.49607 * 359.47190 * 7 6 5 30 30 H 1.08004 * 119.70541 * 180.10087 * 9 8 7 31 31 H 1.08000 * 120.33773 * 180.02562 * 10 9 8 32 32 H 0.96999 * 119.99878 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0453 -0.7309 1.2453 5 6 1.3324 -2.0787 1.3463 6 6 1.4272 -2.8230 0.0421 7 6 1.1748 -4.1875 0.0377 8 7 1.2391 -4.8858 -1.0767 9 6 1.5426 -4.3222 -2.2299 10 6 1.8066 -2.9691 -2.3026 11 6 1.7506 -2.2009 -1.1446 12 6 2.0478 -0.7301 -1.2388 13 1 3.1251 -0.5847 -1.3189 14 6 1.3767 -0.1678 -2.4653 15 1 0.4162 -0.5497 -2.7783 16 6 1.9890 0.8342 -3.1881 17 7 3.2018 1.2290 -2.8676 18 14 1.0958 1.6307 -4.6223 19 1 0.3184 2.7982 -4.1344 20 1 2.0859 2.0826 -5.6326 21 1 0.1730 0.6448 -5.2399 22 1 -0.3632 0.5075 0.8936 23 1 -0.3633 0.5202 -0.8863 24 1 -0.3633 -1.0276 -0.0073 25 1 1.8319 -0.1363 2.1334 26 1 3.1199 -0.8908 1.1576 27 1 0.2833 -1.9139 1.5917 28 1 1.7979 -2.6711 2.1340 29 1 0.9260 -4.6852 0.9633 30 1 1.5849 -4.9246 -3.1253 31 1 2.0543 -2.5117 -3.2491 32 1 3.6324 1.9341 -3.3758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260885142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:11 Heat of formation + Delta-G solvation = -5.242179 kcal Electronic energy + Delta-G solvation = -14798.549247 eV Core-core repulsion = 12529.143209 eV Total energy + Delta-G solvation = -2269.406037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49708 -38.36109 -35.09168 -33.13920 -32.51633 -30.27310 -28.12358 -26.63382 -24.59572 -23.24379 -22.83898 -19.39367 -18.35629 -17.49439 -16.97658 -16.33205 -16.04258 -15.64172 -14.98079 -14.77942 -14.39311 -14.14430 -13.61437 -13.30443 -13.10096 -12.83571 -12.67051 -12.55797 -12.29617 -11.98833 -11.78386 -11.39927 -11.19510 -10.81166 -10.52693 -10.07139 -9.96554 -9.58167 -8.14824 -6.21077 0.39106 0.62432 1.38239 1.40841 1.49283 2.40877 3.07899 3.15965 3.73302 3.97862 4.04838 4.28783 4.29566 4.31611 4.54058 4.57051 4.81285 4.83151 4.86082 5.03927 5.08769 5.12912 5.19730 5.30972 5.39872 5.47315 5.55186 5.68846 5.74262 5.85608 6.01056 6.07570 6.35067 6.90558 7.18611 7.43131 8.93985 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.011793 C = 0.009522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.919580 B = 2373.773316 C = 2939.916180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 H 0.035 0.965 4 C -0.113 4.113 5 C -0.065 4.065 6 C -0.148 4.148 7 C 0.086 3.914 8 N -0.514 5.514 9 C 0.071 3.929 10 C -0.172 4.172 11 C -0.018 4.018 12 C 0.067 3.933 13 H 0.034 0.966 14 C -0.499 4.499 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.926 5.926 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.179 0.821 30 H 0.169 0.831 31 H 0.119 0.881 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -5.574 6.789 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.054 0.946 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.150 4.150 7 C -0.072 4.072 8 N -0.223 5.223 9 C -0.082 4.082 10 C -0.192 4.192 11 C -0.026 4.026 12 C 0.048 3.952 13 H 0.052 0.948 14 C -0.537 4.537 15 H 0.066 0.934 16 C -0.181 4.181 17 N -0.565 5.565 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.196 0.804 30 H 0.186 0.814 31 H 0.137 0.863 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.912 -6.357 6.720 10.043 hybrid contribution 0.159 1.754 -1.375 2.235 sum -3.753 -4.603 5.344 7.989 Atomic orbital electron populations 1.21629 0.95200 1.00675 1.00323 1.21080 0.96086 0.97841 0.94773 0.94595 1.21614 0.99065 0.96383 0.97958 1.20391 1.02046 0.95011 0.92735 1.20859 1.02117 0.95625 0.96364 1.23123 0.96432 0.90562 0.97103 1.67587 1.14850 1.40466 0.99445 1.22861 0.96569 0.92365 0.96452 1.22267 1.01998 0.95137 0.99777 1.20678 0.91819 0.97692 0.92400 1.17841 0.96625 0.86528 0.94184 0.94794 1.21106 1.04100 1.18653 1.09867 0.93414 1.25617 0.95187 0.97699 0.99570 1.70022 1.13920 1.30259 1.42324 0.85750 0.78521 0.79064 0.79569 1.20178 1.21184 1.19345 0.92421 0.94374 0.93364 0.90079 0.93601 0.89247 0.88615 0.80356 0.81395 0.86320 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.04 71.98 0.58 -3.98 16 2 C -0.08 -3.28 2.86 -10.74 -0.03 -3.31 16 3 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -3.70 5.63 30.63 0.17 -3.52 16 5 C -0.06 -1.83 5.10 29.71 0.15 -1.68 16 6 C -0.15 -5.19 5.02 -19.91 -0.10 -5.29 16 7 C 0.09 2.76 10.80 84.84 0.92 3.68 16 8 N -0.51 -18.19 10.36 -195.64 -2.03 -20.21 16 9 C 0.07 2.58 11.19 84.64 0.95 3.52 16 10 C -0.17 -7.19 9.14 22.43 0.21 -6.98 16 11 C -0.02 -0.77 4.97 -19.87 -0.10 -0.87 16 12 C 0.07 3.21 2.14 -12.45 -0.03 3.18 16 13 H 0.03 1.92 7.23 -2.39 -0.02 1.90 16 14 C -0.50 -26.16 5.37 25.60 0.14 -26.02 16 15 H 0.05 2.54 7.80 -2.91 -0.02 2.52 16 16 C 0.02 0.96 5.45 84.65 0.46 1.42 16 17 N -0.93 -52.97 12.76 21.45 0.27 -52.70 16 18 Si 0.94 42.97 29.54 68.60 2.03 45.00 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.04 1.60 7.02 -2.39 -0.02 1.58 16 24 H 0.05 1.75 5.61 -2.39 -0.01 1.73 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 27 H 0.09 2.28 6.83 -2.39 -0.02 2.26 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.17 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.12 5.29 7.39 -2.91 -0.02 5.27 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -60.15 256.67 4.69 -55.47 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.10 Total: 12.30 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 3.31 Total: -39.86 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -1.75 Total: -72.91 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -60.15 4.69 -55.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.225 kcal (2) G-P(sol) polarization free energy of solvation -60.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds