Wall clock time and date at job start Mon Mar 30 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.71388 * 2 1 4 4 C 1.53325 * 109.68552 * 239.45027 * 2 1 3 5 5 C 1.52719 * 108.42994 * 170.40008 * 4 2 1 6 6 C 1.50723 * 110.56159 * 51.30793 * 5 4 2 7 7 N 1.32700 * 117.56171 * 162.30714 * 6 5 4 8 8 C 1.31514 * 122.40504 * 179.66489 * 7 6 5 9 9 C 1.38238 * 120.60582 * 0.02562 * 8 7 6 10 10 C 1.38409 * 118.84735 * 0.11589 * 9 8 7 11 11 C 1.37605 * 122.33860 * 342.19566 * 6 5 4 12 12 C 1.50492 * 122.85311 * 0.45916 * 11 6 5 13 13 H 1.09008 * 109.25888 * 222.35236 * 12 11 6 14 14 C 1.50697 * 109.25936 * 102.87776 * 12 11 6 15 15 H 1.08004 * 119.99599 * 295.15699 * 14 12 11 16 16 C 1.37874 * 120.00416 * 115.15796 * 14 12 11 17 17 N 1.31509 * 119.99793 * 5.91272 * 16 14 12 18 18 Si 1.86793 * 119.99957 * 185.91737 * 16 14 12 19 19 H 1.48500 * 109.47345 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47292 * 119.99768 * 18 16 14 21 21 H 1.48503 * 109.47140 * 239.99676 * 18 16 14 22 22 H 1.08994 * 109.46753 * 299.44941 * 1 2 3 23 23 H 1.08998 * 109.47126 * 59.45161 * 1 2 3 24 24 H 1.08992 * 109.47022 * 179.45044 * 1 2 3 25 25 H 1.09011 * 109.67448 * 50.66570 * 4 2 1 26 26 H 1.09000 * 109.70264 * 290.15651 * 4 2 1 27 27 H 1.09002 * 109.25917 * 291.02824 * 5 4 2 28 28 H 1.09003 * 109.23259 * 171.56291 * 5 4 2 29 29 H 1.07996 * 119.69479 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.57771 * 180.08799 * 9 8 7 31 31 H 1.07997 * 120.56635 * 179.97438 * 10 9 8 32 32 H 0.97000 * 120.00245 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0465 -0.7338 -1.2432 5 6 3.5542 -0.5122 -1.3431 6 6 4.2268 -0.8515 -0.0377 7 7 5.5373 -1.0590 -0.0579 8 6 6.2209 -1.3543 1.0262 9 6 5.5875 -1.4620 2.2502 10 6 4.2203 -1.2560 2.3150 11 6 3.5312 -0.9465 1.1458 12 6 2.0447 -0.7312 1.2387 13 1 1.8221 -0.1371 2.1252 14 6 1.3549 -2.0664 1.3493 15 1 1.4018 -2.7679 0.5294 16 6 0.6640 -2.3926 2.4970 17 7 0.5079 -1.4971 3.4473 18 14 -0.0502 -4.1064 2.7020 19 1 0.2611 -4.9196 1.4991 20 1 0.5430 -4.7496 3.9019 21 1 -1.5229 -4.0123 2.8679 22 1 -0.3632 0.5052 0.8949 23 1 -0.3633 0.5223 -0.8850 24 1 -0.3633 -1.0275 -0.0099 25 1 1.5575 -0.3371 -2.1331 26 1 1.8374 -1.7998 -1.1541 27 1 3.7487 0.5323 -1.5869 28 1 3.9590 -1.1468 -2.1316 29 1 7.2869 -1.5141 0.9595 30 1 6.1495 -1.7031 3.1403 31 1 3.6973 -1.3336 3.2566 32 1 0.0215 -1.7263 4.2547 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260907594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:44 Heat of formation + Delta-G solvation = -4.881602 kcal Electronic energy + Delta-G solvation = -14769.112221 eV Core-core repulsion = 12499.721819 eV Total energy + Delta-G solvation = -2269.390402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34266 -38.12017 -34.93484 -33.47572 -32.33207 -30.72749 -28.12533 -26.13853 -24.53127 -23.03265 -22.71695 -20.38939 -18.12154 -17.31820 -17.03844 -16.53023 -16.06472 -15.16341 -14.86837 -14.56274 -14.45852 -13.76654 -13.63613 -13.52796 -13.21792 -12.88939 -12.75718 -12.58686 -12.12970 -12.06240 -11.79748 -11.17915 -11.09126 -10.92711 -10.51126 -10.27306 -10.06581 -9.40950 -8.10921 -6.16277 0.41900 0.59783 1.36485 1.41122 1.49979 2.41667 3.04160 3.22282 3.54518 4.04765 4.14608 4.23103 4.30592 4.41411 4.48328 4.54414 4.78155 4.88078 4.96166 5.04201 5.09272 5.13683 5.29205 5.36246 5.38686 5.46898 5.57636 5.70887 5.78666 5.85354 5.98987 6.09269 6.36471 6.95428 7.23686 7.45846 8.95711 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.012876 C = 0.010014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.792396 B = 2174.117678 C = 2795.372544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 H 0.048 0.952 4 C -0.101 4.101 5 C -0.055 4.055 6 C 0.092 3.908 7 N -0.509 5.509 8 C 0.072 3.928 9 C -0.178 4.178 10 C -0.093 4.093 11 C -0.097 4.097 12 C 0.065 3.935 13 H 0.043 0.957 14 C -0.490 4.490 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.919 5.919 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.280 1.280 22 H 0.026 0.974 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.183 0.817 30 H 0.155 0.845 31 H 0.110 0.890 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 1.362 -5.228 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.092 4.092 6 C -0.042 4.042 7 N -0.218 5.218 8 C -0.087 4.087 9 C -0.198 4.198 10 C -0.119 4.119 11 C -0.099 4.099 12 C 0.045 3.955 13 H 0.061 0.939 14 C -0.528 4.528 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.559 5.559 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.206 1.206 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.200 0.800 30 H 0.172 0.828 31 H 0.128 0.872 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.908 1.446 -5.851 8.440 hybrid contribution -0.978 -1.076 1.687 2.227 sum 4.931 0.370 -4.164 6.464 Atomic orbital electron populations 1.21471 0.95214 1.01140 0.99275 1.21144 0.95971 0.97048 0.95868 0.93378 1.21518 0.93861 1.00641 0.97882 1.20279 0.94701 1.02221 0.92036 1.21320 0.89478 0.97863 0.95524 1.67467 1.08564 1.13012 1.32806 1.22983 1.01007 0.97073 0.87662 1.22313 0.94532 1.02320 1.00631 1.21691 0.94853 0.96788 0.98590 1.21323 0.99130 0.96290 0.93153 1.17932 0.86046 0.95991 0.95502 0.93912 1.21051 1.30407 1.01039 1.00339 0.93441 1.25509 0.96449 0.99380 0.96009 1.70001 1.42908 1.34526 1.08464 0.85820 0.78221 0.81612 0.77954 1.19485 1.21019 1.20613 0.95481 0.92315 0.93435 0.89701 0.93033 0.89573 0.89889 0.79991 0.82765 0.87190 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 8.81 71.98 0.63 -3.89 16 2 C -0.08 -3.31 2.54 -10.76 -0.03 -3.34 16 3 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 4 C -0.10 -3.57 5.23 30.61 0.16 -3.41 16 5 C -0.05 -1.86 5.92 29.76 0.18 -1.69 16 6 C 0.09 3.74 6.62 42.29 0.28 4.02 16 7 N -0.51 -19.32 10.19 -184.01 -1.87 -21.20 16 8 C 0.07 2.38 11.19 84.74 0.95 3.33 16 9 C -0.18 -6.14 10.12 22.31 0.23 -5.91 16 10 C -0.09 -4.00 9.67 22.54 0.22 -3.78 16 11 C -0.10 -4.35 5.00 -19.85 -0.10 -4.45 16 12 C 0.06 3.11 2.14 -12.43 -0.03 3.08 16 13 H 0.04 2.36 6.89 -2.38 -0.02 2.34 16 14 C -0.49 -25.48 6.01 25.60 0.15 -25.32 16 15 H 0.05 2.52 6.69 -2.91 -0.02 2.50 16 16 C 0.03 1.35 5.45 84.65 0.46 1.81 16 17 N -0.92 -51.34 12.61 21.45 0.27 -51.07 16 18 Si 0.94 42.76 29.54 68.60 2.03 44.78 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 2.04 6.96 -2.39 -0.02 2.03 16 25 H 0.08 2.44 8.13 -2.38 -0.02 2.43 16 26 H 0.05 2.03 6.55 -2.39 -0.02 2.01 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -59.07 260.72 4.62 -54.45 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.10 Total: 12.59 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.10 Total: -39.55 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.60 Total: -72.27 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -59.07 4.62 -54.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260907594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.565 kcal (2) G-P(sol) polarization free energy of solvation -59.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds