Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.78601 * 2 1 4 4 C 1.53306 * 109.63148 * 120.49700 * 2 1 3 5 5 C 1.52825 * 108.48247 * 189.50761 * 4 2 1 6 6 C 1.50347 * 110.45928 * 309.20412 * 5 4 2 7 7 C 1.39085 * 118.69424 * 197.47263 * 6 5 4 8 8 C 1.38056 * 119.32306 * 180.25654 * 7 6 5 9 9 N 1.31890 * 120.59243 * 0.02562 * 8 7 6 10 10 C 1.31666 * 121.64490 * 359.87474 * 9 8 7 11 11 C 1.37837 * 122.81645 * 17.53132 * 6 5 4 12 12 C 1.50467 * 122.52394 * 359.33546 * 11 6 5 13 13 H 1.08998 * 109.30417 * 257.69735 * 12 11 6 14 14 C 1.50703 * 109.30218 * 138.10450 * 12 11 6 15 15 H 1.07998 * 119.99930 * 296.03977 * 14 12 11 16 16 C 1.37882 * 120.00040 * 116.04628 * 14 12 11 17 17 N 1.31514 * 119.99600 * 5.98819 * 16 14 12 18 18 Si 1.86797 * 119.99838 * 185.99136 * 16 14 12 19 19 H 1.48499 * 109.47331 * 59.99821 * 18 16 14 20 20 H 1.48505 * 109.46793 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46926 * 299.99626 * 18 16 14 22 22 H 1.08993 * 109.47134 * 299.50813 * 1 2 3 23 23 H 1.09003 * 109.46979 * 59.50726 * 1 2 3 24 24 H 1.09006 * 109.46941 * 179.50465 * 1 2 3 25 25 H 1.08993 * 109.63937 * 69.80299 * 4 2 1 26 26 H 1.08998 * 109.63030 * 309.19941 * 4 2 1 27 27 H 1.08999 * 109.30659 * 69.50531 * 5 4 2 28 28 H 1.09001 * 109.30614 * 189.10505 * 5 4 2 29 29 H 1.07994 * 120.33527 * 0.20622 * 7 6 5 30 30 H 1.08002 * 119.70032 * 179.97438 * 8 7 6 31 31 H 1.07994 * 119.49206 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99486 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0450 -0.7328 1.2442 5 6 3.5542 -0.5143 1.3450 6 6 4.2215 -0.8448 0.0389 7 6 5.5947 -1.0655 0.0276 8 6 6.2216 -1.3646 -1.1655 9 7 5.5304 -1.4411 -2.2862 10 6 4.2295 -1.2399 -2.3105 11 6 3.5308 -0.9377 -1.1503 12 6 2.0433 -0.7299 -1.2403 13 1 1.5482 -1.6979 -1.3159 14 6 1.7279 0.0881 -2.4661 15 1 2.0860 1.1040 -2.5442 16 6 0.9820 -0.4604 -3.4878 17 7 0.4467 -1.6531 -3.3440 18 14 0.7319 0.4904 -5.0761 19 1 2.0504 0.7647 -5.7017 20 1 -0.1002 -0.3125 -6.0078 21 1 0.0470 1.7747 -4.7815 22 1 -0.3633 0.5061 0.8943 23 1 -0.3633 0.5215 -0.8856 24 1 -0.3633 -1.0277 -0.0089 25 1 1.8343 -1.7984 1.1552 26 1 1.5569 -0.3329 2.1330 27 1 3.7515 0.5276 1.5969 28 1 3.9600 -1.1570 2.1263 29 1 6.1648 -1.0027 0.9427 30 1 7.2877 -1.5367 -1.1814 31 1 3.6980 -1.3108 -3.2479 32 1 -0.0784 -2.0388 -4.0627 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260916511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = 6.129663 kcal Electronic energy + Delta-G solvation = -14701.876866 eV Core-core repulsion = 12432.963949 eV Total energy + Delta-G solvation = -2268.912917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80318 -36.59357 -33.43922 -31.73233 -30.69368 -29.15560 -26.36322 -24.47498 -22.95169 -21.35502 -21.07410 -18.51689 -16.64774 -15.65437 -15.37407 -14.78322 -14.46405 -13.67970 -13.21230 -13.06327 -12.97784 -12.34800 -12.26542 -11.60198 -11.51237 -11.28369 -10.95044 -10.87586 -10.67757 -10.26430 -10.01524 -9.89448 -9.43981 -8.99315 -8.74252 -8.61504 -8.35106 -7.82473 -6.11488 -4.14711 1.99018 2.13918 3.28234 3.33770 3.37414 4.35977 4.67772 5.13883 5.23883 5.29411 5.48011 5.58704 5.72667 5.84791 5.95619 6.09889 6.22108 6.31184 6.32664 6.52128 6.53772 6.64139 6.70729 6.86049 6.92112 7.10159 7.20297 7.37007 7.47615 7.68387 7.74521 7.81609 8.30069 8.86078 8.95533 9.47932 10.95687 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.012897 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.115211 B = 2170.565041 C = 2999.322781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 H 0.053 0.947 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.067 4.067 7 C -0.185 4.185 8 C 0.058 3.942 9 N -0.501 5.501 10 C 0.119 3.881 11 C -0.078 4.078 12 C 0.065 3.935 13 H 0.088 0.912 14 C -0.508 4.508 15 H 0.054 0.946 16 C 0.071 3.929 17 N -0.887 5.887 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 1.156 7.250 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.156 4.156 5 C -0.110 4.110 6 C -0.075 4.075 7 C -0.205 4.205 8 C -0.097 4.097 9 N -0.210 5.210 10 C -0.039 4.039 11 C -0.080 4.080 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.546 4.546 15 H 0.072 0.928 16 C -0.132 4.132 17 N -0.525 5.525 18 Si 0.714 3.286 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.178 0.822 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.318 0.808 6.376 7.742 hybrid contribution -0.435 0.708 -0.105 0.837 sum 3.883 1.516 6.271 7.530 Atomic orbital electron populations 1.21553 0.95554 1.01044 0.99905 1.21195 0.95516 0.98649 0.94312 0.92854 1.21724 0.93915 1.01068 0.98868 1.20356 0.96138 1.00883 0.93614 1.19948 0.93266 0.98647 0.95611 1.21910 0.95060 1.04446 0.99113 1.22361 0.99362 0.99395 0.88570 1.67617 1.09411 1.14277 1.29696 1.23029 0.88427 0.93197 0.99280 1.21555 1.00632 0.94137 0.91681 1.18047 0.85398 0.99133 0.92827 0.89447 1.20889 1.33311 0.99062 1.01330 0.92752 1.24949 0.94892 0.94954 0.98444 1.69867 1.33503 1.16074 1.33016 0.86732 0.78444 0.80003 0.83416 1.19953 1.21219 1.20167 0.95452 0.91751 0.93488 0.92199 0.92775 0.91281 0.91789 0.86481 0.84418 0.82206 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 9.03 37.16 0.34 -2.10 16 2 C -0.08 -1.58 2.16 -90.57 -0.20 -1.77 16 3 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 4 C -0.12 -2.02 5.28 -26.66 -0.14 -2.16 16 5 C -0.07 -1.18 5.72 -28.14 -0.16 -1.34 16 6 C -0.07 -1.29 5.74 -104.63 -0.60 -1.89 16 7 C -0.19 -3.21 9.74 -39.33 -0.38 -3.59 16 8 C 0.06 1.06 11.19 -17.59 -0.20 0.86 16 9 N -0.50 -10.75 10.36 -13.19 -0.14 -10.88 16 10 C 0.12 2.73 10.24 -17.43 -0.18 2.55 16 11 C -0.08 -1.73 5.41 -104.69 -0.57 -2.29 16 12 C 0.06 1.51 1.97 -93.14 -0.18 1.33 16 13 H 0.09 2.30 6.88 -51.93 -0.36 1.94 16 14 C -0.51 -12.96 6.15 -34.44 -0.21 -13.17 16 15 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 16 C 0.07 1.83 5.40 -17.82 -0.10 1.73 16 17 N -0.89 -23.99 12.61 55.43 0.70 -23.29 16 18 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.40 7.54 -51.93 -0.39 1.00 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.16 3.91 7.27 -52.49 -0.38 3.53 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 262.67 15.07 3.96 3.96 Total: -1.00 -26.93 262.67 -7.55 -34.49 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.47 Total: 2.09 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.58 Total: -21.83 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.56 Total: -34.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.93 -7.55 -34.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.618 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds