Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.78601 * 2 1 4 4 C 1.53306 * 109.63148 * 120.49700 * 2 1 3 5 5 C 1.52825 * 108.48247 * 189.50761 * 4 2 1 6 6 C 1.50347 * 110.45928 * 309.20412 * 5 4 2 7 7 C 1.39085 * 118.69424 * 197.47263 * 6 5 4 8 8 C 1.38056 * 119.32306 * 180.25654 * 7 6 5 9 9 N 1.31890 * 120.59243 * 0.02562 * 8 7 6 10 10 C 1.31666 * 121.64490 * 359.87474 * 9 8 7 11 11 C 1.37837 * 122.81645 * 17.53132 * 6 5 4 12 12 C 1.50467 * 122.52394 * 359.33546 * 11 6 5 13 13 H 1.08998 * 109.30417 * 257.69735 * 12 11 6 14 14 C 1.50703 * 109.30218 * 138.10450 * 12 11 6 15 15 H 1.07998 * 119.99930 * 296.03977 * 14 12 11 16 16 C 1.37882 * 120.00040 * 116.04628 * 14 12 11 17 17 N 1.31514 * 119.99600 * 5.98819 * 16 14 12 18 18 Si 1.86797 * 119.99838 * 185.99136 * 16 14 12 19 19 H 1.48499 * 109.47331 * 59.99821 * 18 16 14 20 20 H 1.48505 * 109.46793 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46926 * 299.99626 * 18 16 14 22 22 H 1.08993 * 109.47134 * 299.50813 * 1 2 3 23 23 H 1.09003 * 109.46979 * 59.50726 * 1 2 3 24 24 H 1.09006 * 109.46941 * 179.50465 * 1 2 3 25 25 H 1.08993 * 109.63937 * 69.80299 * 4 2 1 26 26 H 1.08998 * 109.63030 * 309.19941 * 4 2 1 27 27 H 1.08999 * 109.30659 * 69.50531 * 5 4 2 28 28 H 1.09001 * 109.30614 * 189.10505 * 5 4 2 29 29 H 1.07994 * 120.33527 * 0.20622 * 7 6 5 30 30 H 1.08002 * 119.70032 * 179.97438 * 8 7 6 31 31 H 1.07994 * 119.49206 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99486 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0450 -0.7328 1.2442 5 6 3.5542 -0.5143 1.3450 6 6 4.2215 -0.8448 0.0389 7 6 5.5947 -1.0655 0.0276 8 6 6.2216 -1.3646 -1.1655 9 7 5.5304 -1.4411 -2.2862 10 6 4.2295 -1.2399 -2.3105 11 6 3.5308 -0.9377 -1.1503 12 6 2.0433 -0.7299 -1.2403 13 1 1.5482 -1.6979 -1.3159 14 6 1.7279 0.0881 -2.4661 15 1 2.0860 1.1040 -2.5442 16 6 0.9820 -0.4604 -3.4878 17 7 0.4467 -1.6531 -3.3440 18 14 0.7319 0.4904 -5.0761 19 1 2.0504 0.7647 -5.7017 20 1 -0.1002 -0.3125 -6.0078 21 1 0.0470 1.7747 -4.7815 22 1 -0.3633 0.5061 0.8943 23 1 -0.3633 0.5215 -0.8856 24 1 -0.3633 -1.0277 -0.0089 25 1 1.8343 -1.7984 1.1552 26 1 1.5569 -0.3329 2.1330 27 1 3.7515 0.5276 1.5969 28 1 3.9600 -1.1570 2.1263 29 1 6.1648 -1.0027 0.9427 30 1 7.2877 -1.5367 -1.1814 31 1 3.6980 -1.3108 -3.2479 32 1 -0.0784 -2.0388 -4.0627 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260916511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -8.329395 kcal Electronic energy + Delta-G solvation = -14702.503858 eV Core-core repulsion = 12432.963949 eV Total energy + Delta-G solvation = -2269.539909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34938 -38.16614 -35.19185 -33.41428 -32.33380 -30.64936 -28.11136 -26.22159 -24.49383 -22.96004 -22.60933 -20.09220 -18.58081 -17.23687 -16.93078 -16.57320 -16.04457 -15.13878 -14.84967 -14.62473 -14.50518 -14.00888 -13.77236 -13.41386 -13.18032 -12.82221 -12.73425 -12.51541 -12.22191 -11.95384 -11.80705 -11.47976 -11.18671 -10.73549 -10.61704 -10.06362 -10.00901 -9.49292 -8.12175 -6.19163 0.45517 0.60343 1.38733 1.41532 1.47461 2.41530 3.10589 3.16666 3.79851 3.89693 4.04029 4.20842 4.34539 4.39151 4.53389 4.62768 4.77291 4.86282 4.95532 5.00948 5.08539 5.12502 5.23636 5.35913 5.37830 5.43607 5.58428 5.67279 5.74623 5.87696 5.91133 6.13775 6.38228 6.95134 7.29090 7.44605 8.94369 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.012897 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.115211 B = 2170.565041 C = 2999.322781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 H 0.049 0.951 4 C -0.112 4.112 5 C -0.071 4.071 6 C -0.067 4.067 7 C -0.171 4.171 8 C 0.057 3.943 9 N -0.523 5.523 10 C 0.091 3.909 11 C -0.107 4.107 12 C 0.067 3.933 13 H 0.048 0.952 14 C -0.509 4.509 15 H 0.041 0.959 16 C 0.029 3.971 17 N -0.917 5.917 18 Si 0.936 3.064 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.270 1.270 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.125 0.875 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 1.903 9.932 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 H 0.067 0.933 4 C -0.150 4.150 5 C -0.107 4.107 6 C -0.075 4.075 7 C -0.190 4.190 8 C -0.098 4.098 9 N -0.233 5.233 10 C -0.066 4.066 11 C -0.110 4.110 12 C 0.048 3.952 13 H 0.066 0.934 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.171 4.171 17 N -0.556 5.556 18 Si 0.762 3.238 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.195 1.195 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.184 0.816 30 H 0.196 0.804 31 H 0.143 0.857 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.020 1.568 9.051 10.983 hybrid contribution -0.841 0.471 -0.878 1.304 sum 5.179 2.038 8.173 9.888 Atomic orbital electron populations 1.21477 0.95574 1.00190 1.00151 1.21121 0.95544 0.98294 0.94698 0.93257 1.21658 0.95246 0.99990 0.98063 1.20471 0.94833 1.02839 0.92574 1.20391 0.94418 0.97041 0.95688 1.22381 0.94286 1.01793 1.00574 1.23118 1.01045 0.97621 0.88020 1.67559 1.08672 1.15152 1.31883 1.22613 0.89464 0.95907 0.98608 1.21419 0.99856 0.96577 0.93098 1.17880 0.86536 0.97109 0.93631 0.93398 1.21078 1.32436 0.98606 1.02598 0.94043 1.25505 0.95092 0.95660 1.00808 1.69982 1.34697 1.17359 1.33593 0.85950 0.78078 0.79149 0.80614 1.20228 1.20955 1.19508 0.91928 0.94729 0.94789 0.93299 0.89539 0.89273 0.88216 0.81569 0.80414 0.85716 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 9.03 71.98 0.65 -3.95 16 2 C -0.08 -3.10 2.16 -10.76 -0.02 -3.13 16 3 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 4 C -0.11 -3.50 5.28 30.64 0.16 -3.34 16 5 C -0.07 -1.95 5.72 29.68 0.17 -1.78 16 6 C -0.07 -2.40 5.74 -19.87 -0.11 -2.51 16 7 C -0.17 -5.14 9.74 22.43 0.22 -4.92 16 8 C 0.06 1.91 11.19 84.64 0.95 2.86 16 9 N -0.52 -22.32 10.36 -195.64 -2.03 -24.35 16 10 C 0.09 4.34 10.24 84.84 0.87 5.21 16 11 C -0.11 -4.81 5.41 -19.91 -0.11 -4.92 16 12 C 0.07 3.27 1.97 -12.43 -0.02 3.24 16 13 H 0.05 2.68 6.88 -2.39 -0.02 2.66 16 14 C -0.51 -27.21 6.15 25.60 0.16 -27.05 16 15 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 16 C 0.03 1.57 5.40 84.66 0.46 2.03 16 17 N -0.92 -52.32 12.61 21.45 0.27 -52.05 16 18 Si 0.94 43.67 29.54 68.60 2.03 45.69 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 1.53 7.54 -2.39 -0.02 1.51 16 24 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.05 1.63 8.10 -2.39 -0.02 1.62 16 26 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 29 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.13 6.64 7.27 -2.91 -0.02 6.62 16 32 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -61.99 262.67 4.72 -57.27 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.09 Total: 11.71 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.36 Total: -38.27 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.76 Total: -76.40 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.99 4.72 -57.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.937 kcal (2) G-P(sol) polarization free energy of solvation -61.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds