Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.78454 * 2 1 4 4 C 1.53302 * 109.63168 * 239.51680 * 2 1 3 5 5 C 1.52822 * 108.48052 * 170.52549 * 4 2 1 6 6 C 1.50340 * 110.45650 * 50.87312 * 5 4 2 7 7 C 1.39072 * 118.70143 * 162.56809 * 6 5 4 8 8 C 1.38057 * 119.33155 * 179.48773 * 7 6 5 9 9 N 1.31887 * 120.58364 * 359.96443 * 8 7 6 10 10 C 1.31679 * 121.64963 * 0.14363 * 9 8 7 11 11 C 1.37843 * 122.80774 * 342.23386 * 6 5 4 12 12 C 1.50465 * 122.51631 * 0.94940 * 11 6 5 13 13 H 1.09002 * 109.30053 * 221.74107 * 12 11 6 14 14 C 1.50697 * 109.30098 * 102.35937 * 12 11 6 15 15 H 1.08001 * 120.00290 * 295.52850 * 14 12 11 16 16 C 1.37882 * 120.00248 * 115.53032 * 14 12 11 17 17 N 1.31508 * 119.99639 * 5.86577 * 16 14 12 18 18 Si 1.86801 * 120.00034 * 185.86639 * 16 14 12 19 19 H 1.48498 * 109.47214 * 59.99963 * 18 16 14 20 20 H 1.48497 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47086 * 299.99980 * 18 16 14 22 22 H 1.09009 * 109.47070 * 180.48316 * 1 2 3 23 23 H 1.08994 * 109.47295 * 300.48005 * 1 2 3 24 24 H 1.08996 * 109.47083 * 60.48910 * 1 2 3 25 25 H 1.08999 * 109.63532 * 50.82787 * 4 2 1 26 26 H 1.09001 * 109.63502 * 290.22329 * 4 2 1 27 27 H 1.09000 * 109.30940 * 290.57354 * 5 4 2 28 28 H 1.09001 * 109.30824 * 171.17402 * 5 4 2 29 29 H 1.08001 * 120.33678 * 359.45959 * 7 6 5 30 30 H 1.07999 * 119.70896 * 179.97438 * 8 7 6 31 31 H 1.07999 * 119.49355 * 180.02562 * 10 9 8 32 32 H 0.97008 * 119.99964 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0450 -0.7325 -1.2443 5 6 3.5543 -0.5147 -1.3446 6 6 4.2212 -0.8478 -0.0391 7 6 5.5942 -1.0684 -0.0276 8 6 6.2216 -1.3648 1.1659 9 7 5.5308 -1.4385 2.2870 10 6 4.2297 -1.2373 2.3113 11 6 3.5308 -0.9378 1.1506 12 6 2.0433 -0.7299 1.2403 13 1 1.8150 -0.1383 2.1269 14 6 1.3590 -2.0681 1.3497 15 1 1.4157 -2.7720 0.5326 16 6 0.6606 -2.3939 2.4930 17 7 0.4936 -1.4964 3.4396 18 14 -0.0483 -4.1101 2.6974 19 1 1.0503 -5.1082 2.6514 20 1 -0.7488 -4.2040 4.0033 21 1 -1.0104 -4.3822 1.5994 22 1 -0.3634 -1.0277 0.0087 23 1 -0.3633 0.5212 0.8856 24 1 -0.3633 0.5062 -0.8943 25 1 1.5573 -0.3321 -2.1331 26 1 1.8338 -1.7981 -1.1557 27 1 3.7522 0.5277 -1.5946 28 1 3.9593 -1.1536 -2.1294 29 1 6.1639 -1.0090 -0.9432 30 1 7.2876 -1.5376 1.1818 31 1 3.6985 -1.3059 3.2491 32 1 0.0025 -1.7257 4.2442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260916514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = 7.902230 kcal Electronic energy + Delta-G solvation = -14764.270895 eV Core-core repulsion = 12495.434842 eV Total energy + Delta-G solvation = -2268.836053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81309 -36.66993 -33.27622 -31.69963 -30.70679 -29.09219 -26.39186 -24.37088 -22.96233 -21.55867 -21.13873 -18.59814 -16.18075 -15.80952 -15.37201 -14.74260 -14.37765 -13.77011 -13.29528 -13.08177 -12.93510 -12.30054 -12.22605 -11.79555 -11.29265 -11.25131 -10.96284 -10.86387 -10.57141 -10.33565 -10.14951 -9.83154 -9.20397 -8.98019 -8.70578 -8.62042 -8.39019 -7.84633 -6.11682 -4.13024 1.97240 2.15148 3.27301 3.32687 3.36158 4.35224 4.66446 5.16228 5.25456 5.31626 5.52115 5.67298 5.73961 5.87175 5.95885 6.11817 6.24698 6.32739 6.39617 6.54539 6.58612 6.65138 6.85499 6.87473 6.90598 7.12599 7.20520 7.43497 7.50893 7.63332 7.74093 7.82766 8.28126 8.82322 8.94203 9.47796 10.95376 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.012908 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.830369 B = 2168.729170 C = 2794.373616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.039 0.961 4 C -0.111 4.111 5 C -0.073 4.073 6 C -0.064 4.064 7 C -0.181 4.181 8 C 0.055 3.945 9 N -0.497 5.497 10 C 0.104 3.896 11 C -0.068 4.068 12 C 0.063 3.937 13 H 0.083 0.917 14 C -0.497 4.497 15 H 0.055 0.945 16 C 0.070 3.930 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.022 0.978 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 2.132 -6.841 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.057 0.943 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.071 4.071 7 C -0.201 4.201 8 C -0.100 4.100 9 N -0.206 5.206 10 C -0.055 4.055 11 C -0.071 4.071 12 C 0.044 3.956 13 H 0.101 0.899 14 C -0.534 4.534 15 H 0.073 0.927 16 C -0.133 4.133 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.439 1.958 -5.874 7.618 hybrid contribution -0.667 -0.880 -0.629 1.271 sum 3.772 1.079 -6.503 7.595 Atomic orbital electron populations 1.21568 0.95362 1.02394 0.98580 1.21149 0.95826 0.96684 0.96089 0.94271 1.21597 0.93203 1.02200 0.97794 1.20359 0.96587 1.00539 0.93554 1.19869 0.93043 0.98570 0.95664 1.21929 0.95102 1.04007 0.99057 1.22318 0.99338 0.99857 0.88524 1.67545 1.09283 1.13817 1.29924 1.22857 0.88815 0.94806 0.98993 1.21455 0.99736 0.93925 0.91948 1.18056 0.84708 0.97221 0.95639 0.89853 1.20818 1.31006 1.00259 1.01338 0.92659 1.24933 0.95622 0.96753 0.95956 1.69857 1.41135 1.33198 1.08310 0.86718 0.79273 0.85058 0.77424 1.20195 1.21200 1.20155 0.91404 0.93343 0.95847 0.93260 0.90963 0.91565 0.91859 0.86466 0.84398 0.82852 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.83 37.16 0.33 -2.10 16 2 C -0.08 -1.59 2.53 -90.57 -0.23 -1.82 16 3 H 0.04 0.76 8.10 -51.92 -0.42 0.34 16 4 C -0.11 -1.99 5.24 -26.67 -0.14 -2.12 16 5 C -0.07 -1.22 5.72 -28.15 -0.16 -1.38 16 6 C -0.06 -1.23 5.74 -104.63 -0.60 -1.83 16 7 C -0.18 -3.15 9.74 -39.34 -0.38 -3.54 16 8 C 0.05 1.00 11.19 -17.59 -0.20 0.80 16 9 N -0.50 -10.55 10.36 -13.19 -0.14 -10.68 16 10 C 0.10 2.34 10.73 -17.43 -0.19 2.15 16 11 C -0.07 -1.51 4.99 -104.69 -0.52 -2.03 16 12 C 0.06 1.46 2.16 -93.14 -0.20 1.26 16 13 H 0.08 2.17 6.89 -51.93 -0.36 1.81 16 14 C -0.50 -12.54 6.02 -34.44 -0.21 -12.74 16 15 H 0.06 1.42 6.70 -52.49 -0.35 1.07 16 16 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 17 N -0.89 -23.92 12.61 55.43 0.70 -23.22 16 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H 0.07 1.46 6.93 -51.92 -0.36 1.10 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.07 1.42 6.55 -51.93 -0.34 1.08 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.15 3.61 8.06 -52.49 -0.42 3.19 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 260.50 15.07 3.93 3.93 Total: -1.00 -26.84 260.50 -7.48 -34.31 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.35 Total: 1.72 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.60 Total: -21.63 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.56 Total: -33.90 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.84 -7.48 -34.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.215 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds