Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.78454 * 2 1 4 4 C 1.53302 * 109.63168 * 239.51680 * 2 1 3 5 5 C 1.52822 * 108.48052 * 170.52549 * 4 2 1 6 6 C 1.50340 * 110.45650 * 50.87312 * 5 4 2 7 7 C 1.39072 * 118.70143 * 162.56809 * 6 5 4 8 8 C 1.38057 * 119.33155 * 179.48773 * 7 6 5 9 9 N 1.31887 * 120.58364 * 359.96443 * 8 7 6 10 10 C 1.31679 * 121.64963 * 0.14363 * 9 8 7 11 11 C 1.37843 * 122.80774 * 342.23386 * 6 5 4 12 12 C 1.50465 * 122.51631 * 0.94940 * 11 6 5 13 13 H 1.09002 * 109.30053 * 221.74107 * 12 11 6 14 14 C 1.50697 * 109.30098 * 102.35937 * 12 11 6 15 15 H 1.08001 * 120.00290 * 295.52850 * 14 12 11 16 16 C 1.37882 * 120.00248 * 115.53032 * 14 12 11 17 17 N 1.31508 * 119.99639 * 5.86577 * 16 14 12 18 18 Si 1.86801 * 120.00034 * 185.86639 * 16 14 12 19 19 H 1.48498 * 109.47214 * 59.99963 * 18 16 14 20 20 H 1.48497 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47086 * 299.99980 * 18 16 14 22 22 H 1.09009 * 109.47070 * 180.48316 * 1 2 3 23 23 H 1.08994 * 109.47295 * 300.48005 * 1 2 3 24 24 H 1.08996 * 109.47083 * 60.48910 * 1 2 3 25 25 H 1.08999 * 109.63532 * 50.82787 * 4 2 1 26 26 H 1.09001 * 109.63502 * 290.22329 * 4 2 1 27 27 H 1.09000 * 109.30940 * 290.57354 * 5 4 2 28 28 H 1.09001 * 109.30824 * 171.17402 * 5 4 2 29 29 H 1.08001 * 120.33678 * 359.45959 * 7 6 5 30 30 H 1.07999 * 119.70896 * 179.97438 * 8 7 6 31 31 H 1.07999 * 119.49355 * 180.02562 * 10 9 8 32 32 H 0.97008 * 119.99964 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0450 -0.7325 -1.2443 5 6 3.5543 -0.5147 -1.3446 6 6 4.2212 -0.8478 -0.0391 7 6 5.5942 -1.0684 -0.0276 8 6 6.2216 -1.3648 1.1659 9 7 5.5308 -1.4385 2.2870 10 6 4.2297 -1.2373 2.3113 11 6 3.5308 -0.9378 1.1506 12 6 2.0433 -0.7299 1.2403 13 1 1.8150 -0.1383 2.1269 14 6 1.3590 -2.0681 1.3497 15 1 1.4157 -2.7720 0.5326 16 6 0.6606 -2.3939 2.4930 17 7 0.4936 -1.4964 3.4396 18 14 -0.0483 -4.1101 2.6974 19 1 1.0503 -5.1082 2.6514 20 1 -0.7488 -4.2040 4.0033 21 1 -1.0104 -4.3822 1.5994 22 1 -0.3634 -1.0277 0.0087 23 1 -0.3633 0.5212 0.8856 24 1 -0.3633 0.5062 -0.8943 25 1 1.5573 -0.3321 -2.1331 26 1 1.8338 -1.7981 -1.1557 27 1 3.7522 0.5277 -1.5946 28 1 3.9593 -1.1536 -2.1294 29 1 6.1639 -1.0090 -0.9432 30 1 7.2876 -1.5376 1.1818 31 1 3.6985 -1.3059 3.2491 32 1 0.0025 -1.7257 4.2442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260916514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = -6.360779 kcal Electronic energy + Delta-G solvation = -14764.889385 eV Core-core repulsion = 12495.434842 eV Total energy + Delta-G solvation = -2269.454544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36243 -38.25925 -35.01397 -33.39887 -32.32032 -30.59146 -28.15418 -26.15004 -24.50357 -23.14565 -22.64424 -20.29541 -18.01445 -17.37682 -16.92341 -16.58139 -15.90687 -15.31277 -14.85430 -14.68778 -14.50392 -13.91428 -13.75279 -13.52444 -13.03390 -12.83603 -12.70649 -12.61171 -12.12696 -12.06068 -11.84912 -11.41250 -10.93433 -10.69457 -10.61511 -10.07194 -10.02824 -9.51051 -8.10045 -6.15525 0.43811 0.61581 1.39059 1.41445 1.46962 2.42099 3.07024 3.23763 3.77650 3.91154 4.05099 4.24652 4.33838 4.38998 4.53689 4.63538 4.80937 4.87562 4.97106 4.99166 5.10574 5.13495 5.29549 5.33078 5.39373 5.54536 5.56439 5.71812 5.79324 5.87124 5.93575 6.15734 6.36614 6.96816 7.26406 7.46498 8.96277 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.012908 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.830369 B = 2168.729170 C = 2794.373616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 H 0.047 0.953 4 C -0.105 4.105 5 C -0.071 4.071 6 C -0.066 4.066 7 C -0.168 4.168 8 C 0.055 3.945 9 N -0.518 5.518 10 C 0.077 3.923 11 C -0.095 4.095 12 C 0.064 3.936 13 H 0.041 0.959 14 C -0.493 4.493 15 H 0.049 0.951 16 C 0.024 3.976 17 N -0.919 5.919 18 Si 0.937 3.063 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.267 1.267 22 H 0.046 0.954 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.179 0.821 31 H 0.122 0.878 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 2.143 -9.933 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.143 4.143 5 C -0.108 4.108 6 C -0.074 4.074 7 C -0.187 4.187 8 C -0.101 4.101 9 N -0.227 5.227 10 C -0.080 4.080 11 C -0.098 4.098 12 C 0.045 3.955 13 H 0.059 0.941 14 C -0.531 4.531 15 H 0.067 0.933 16 C -0.175 4.175 17 N -0.559 5.559 18 Si 0.764 3.236 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.192 1.192 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.183 0.817 30 H 0.196 0.804 31 H 0.139 0.861 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.047 1.965 -8.971 10.996 hybrid contribution -1.042 -0.845 0.279 1.370 sum 5.005 1.121 -8.692 10.093 Atomic orbital electron populations 1.21486 0.95521 1.01077 0.99150 1.21118 0.95741 0.97028 0.95962 0.93433 1.21530 0.94847 1.00473 0.97406 1.20460 0.95004 1.02728 0.92561 1.20303 0.94225 0.97167 0.95690 1.22388 0.94322 1.01492 1.00534 1.23078 1.01029 0.97995 0.87971 1.67506 1.08568 1.14675 1.31994 1.22505 0.89797 0.97277 0.98382 1.21318 0.99022 0.96166 0.93271 1.17895 0.86063 0.95946 0.95583 0.94123 1.21005 1.30408 1.00915 1.00737 0.93298 1.25532 0.96526 0.99384 0.96050 1.69988 1.42526 1.34604 1.08742 0.85931 0.78594 0.81655 0.77458 1.20614 1.21231 1.19194 0.93532 0.95635 0.92386 0.90145 0.93174 0.89036 0.88750 0.81668 0.80413 0.86064 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.83 71.98 0.64 -3.93 16 2 C -0.08 -3.16 2.53 -10.76 -0.03 -3.19 16 3 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16 4 C -0.11 -3.46 5.24 30.64 0.16 -3.30 16 5 C -0.07 -2.02 5.72 29.68 0.17 -1.85 16 6 C -0.07 -2.36 5.74 -19.87 -0.11 -2.47 16 7 C -0.17 -5.08 9.74 22.43 0.22 -4.86 16 8 C 0.05 1.82 11.19 84.64 0.95 2.77 16 9 N -0.52 -21.83 10.36 -195.64 -2.03 -23.86 16 10 C 0.08 3.63 10.73 84.84 0.91 4.54 16 11 C -0.10 -4.25 4.99 -19.91 -0.10 -4.35 16 12 C 0.06 3.09 2.16 -12.43 -0.03 3.07 16 13 H 0.04 2.26 6.89 -2.39 -0.02 2.25 16 14 C -0.49 -25.70 6.02 25.60 0.15 -25.54 16 15 H 0.05 2.56 6.70 -2.91 -0.02 2.54 16 16 C 0.02 1.30 5.45 84.66 0.46 1.76 16 17 N -0.92 -52.38 12.61 21.45 0.27 -52.11 16 18 Si 0.94 43.45 29.54 68.60 2.03 45.47 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H 0.05 2.01 6.93 -2.38 -0.02 2.00 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.16 8.13 -2.39 -0.02 2.15 16 26 H 0.05 1.87 6.55 -2.39 -0.02 1.86 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.12 6.27 8.06 -2.91 -0.02 6.25 16 32 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -61.15 260.50 4.76 -56.39 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.10 Total: 11.45 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.39 Total: -37.35 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.76 Total: -75.97 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.15 4.76 -56.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.034 kcal (2) G-P(sol) polarization free energy of solvation -61.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds