Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38276 * 119.92667 * 2 1 4 4 C 1.38256 * 119.83508 * 180.02562 * 3 2 1 5 5 C 1.37868 * 120.22915 * 359.97438 * 4 3 2 6 6 C 1.39633 * 120.28178 * 0.02562 * 5 4 3 7 7 C 1.38125 * 119.92179 * 180.02562 * 2 1 3 8 8 C 1.51215 * 130.99250 * 359.95663 * 7 2 1 9 9 H 1.09007 * 110.42618 * 61.13418 * 8 7 2 10 10 C 1.53002 * 110.42155 * 298.78136 * 8 7 2 11 11 C 1.50706 * 109.46931 * 174.99787 * 10 8 7 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 8 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.53749 * 104.53932 * 180.02562 * 8 7 2 20 20 N 1.39576 * 129.32757 * 180.02562 * 6 5 4 21 21 H 1.09004 * 109.46713 * 269.97972 * 1 2 3 22 22 H 1.09005 * 109.46928 * 29.97691 * 1 2 3 23 23 H 1.08997 * 109.47435 * 149.97761 * 1 2 3 24 24 H 1.08001 * 120.08210 * 0.04256 * 3 2 1 25 25 H 1.07996 * 119.88408 * 179.97438 * 4 3 2 26 26 H 1.08000 * 119.86350 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.46986 * 55.00345 * 10 8 7 28 28 H 1.08993 * 109.47662 * 295.00122 * 10 8 7 29 29 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 30 30 H 1.09008 * 110.30024 * 118.93122 * 19 8 7 31 31 H 1.09002 * 110.30141 * 241.06889 * 19 8 7 32 32 H 0.97005 * 124.95379 * 359.95821 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5795 1.1962 -0.0005 5 6 4.2717 0.0039 -0.0005 6 6 3.5824 -1.2105 -0.0005 7 6 2.1961 -1.1971 -0.0005 8 6 1.7016 -2.6262 -0.0003 9 1 1.1106 -2.8244 -0.8945 10 6 0.8755 -2.9050 1.2569 11 6 0.2923 -4.2924 1.1773 12 1 0.4913 -4.9133 0.3163 13 6 -0.4954 -4.7690 2.2037 14 7 -1.0039 -5.9798 2.1344 15 14 -0.8403 -3.6949 3.6926 16 1 0.2057 -3.9241 4.7213 17 1 -0.8298 -2.2667 3.2856 18 1 -2.1711 -4.0398 4.2541 19 6 2.9818 -3.4776 -0.0005 20 7 4.0847 -2.5127 -0.0001 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6570 2.1338 0.0007 25 1 4.1190 2.1317 -0.0010 26 1 5.3517 0.0090 -0.0005 27 1 0.0689 -2.1756 1.3309 28 1 1.5151 -2.8297 2.1362 29 1 -1.5578 -6.3153 2.8566 30 1 3.0231 -4.0987 0.8943 31 1 3.0227 -4.0989 -0.8952 32 1 5.0265 -2.7451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260947295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = 18.173402 kcal Electronic energy + Delta-G solvation = -14375.229571 eV Core-core repulsion = 12106.838910 eV Total energy + Delta-G solvation = -2268.390662 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.02873 -36.14766 -33.79346 -32.32422 -30.42938 -28.86731 -27.25613 -25.70600 -22.81047 -21.33310 -21.13334 -19.26777 -16.90104 -16.50512 -15.14778 -15.07411 -14.79034 -14.06716 -13.72384 -13.18406 -12.84586 -12.67730 -12.33317 -12.06531 -11.71903 -11.56730 -11.41636 -11.06386 -10.90312 -10.64856 -10.21787 -9.90191 -9.63063 -9.57212 -9.12766 -8.54736 -8.08442 -6.86311 -6.06054 -4.03995 1.84090 2.02405 3.30760 3.38525 3.43358 3.88189 4.24779 4.44735 5.13424 5.26605 5.30424 5.43648 5.48507 5.75746 5.80734 5.87959 5.92722 6.09506 6.16285 6.22812 6.38910 6.54582 6.64032 6.75194 6.84487 6.92837 7.12095 7.17668 7.30006 7.41681 7.63274 7.78292 8.27012 8.50733 8.98246 9.56944 11.07045 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033797 B = 0.009493 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.271569 B = 2948.821658 C = 3387.538904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.027 4.027 3 C -0.183 4.183 4 C -0.082 4.082 5 C -0.199 4.199 6 C 0.198 3.802 7 C -0.154 4.154 8 C -0.036 4.036 9 H 0.081 0.919 10 C -0.001 4.001 11 C -0.520 4.520 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.903 5.903 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.264 1.264 18 H -0.288 1.288 19 C 0.126 3.874 20 N -0.748 5.748 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.025 0.975 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 11.391 -3.954 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.100 4.100 5 C -0.222 4.222 6 C 0.093 3.907 7 C -0.158 4.158 8 C -0.055 4.055 9 H 0.099 0.901 10 C -0.038 4.038 11 C -0.558 4.558 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.204 1.204 17 H -0.188 1.188 18 H -0.214 1.214 19 C 0.003 3.997 20 N -0.379 5.379 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.127 0.873 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.485 11.068 -3.858 13.908 hybrid contribution 0.278 0.277 0.909 0.990 sum 7.764 11.345 -2.949 14.060 Atomic orbital electron populations 1.20827 0.91582 1.02349 1.02454 1.19171 0.95615 0.91334 0.96681 1.20620 0.93963 0.96719 1.09029 1.20573 0.94100 0.96545 0.98827 1.20183 0.98684 0.90505 1.12827 1.18410 0.92910 0.85947 0.93399 1.20107 0.92564 0.95476 1.07701 1.20584 0.95448 0.87971 1.01509 0.90105 1.19655 0.94785 0.97667 0.91734 1.21139 1.30223 0.98220 1.06203 0.90863 1.24989 0.95340 0.94774 0.98144 1.69912 1.34385 1.16573 1.33274 0.86839 0.77629 0.81850 0.83411 1.20397 1.18831 1.21401 1.21933 0.84908 0.91295 1.01596 1.44914 1.07723 1.02939 1.82357 0.91131 0.92293 0.90887 0.86781 0.86766 0.87340 0.95644 0.97009 0.92752 0.90322 0.92482 0.75973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.60 36.01 0.31 -1.52 16 2 C -0.03 -0.47 5.88 -104.65 -0.61 -1.09 16 3 C -0.18 -2.78 9.71 -39.56 -0.38 -3.16 16 4 C -0.08 -1.17 10.02 -39.71 -0.40 -1.57 16 5 C -0.20 -3.04 10.07 -39.20 -0.39 -3.43 16 6 C 0.20 3.45 7.03 -83.66 -0.59 2.86 16 7 C -0.15 -2.91 5.42 -104.26 -0.57 -3.47 16 8 C -0.04 -0.74 2.42 -91.13 -0.22 -0.96 16 9 H 0.08 1.66 8.14 -51.92 -0.42 1.23 16 10 C 0.00 -0.02 3.31 -27.88 -0.09 -0.12 16 11 C -0.52 -14.32 9.15 -34.44 -0.32 -14.63 16 12 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 15 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C 0.13 2.33 7.31 -3.64 -0.03 2.30 16 20 N -0.75 -12.13 6.53 -58.12 -0.38 -12.51 16 21 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 22 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 23 H 0.07 1.22 7.57 -51.93 -0.39 0.83 16 24 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.03 0.60 5.43 -51.93 -0.28 0.32 16 28 H 0.01 0.29 7.54 -51.93 -0.39 -0.11 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.08 1.57 7.51 -51.92 -0.39 1.18 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.40 5.30 8.96 -40.82 -0.37 4.93 16 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -30.26 262.83 -8.05 -38.31 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.35 Total: 2.74 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.39 Total: -22.92 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.39 Total: -39.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.26 -8.05 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.487 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds