Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38347 * 119.96105 * 2 1 4 4 C 1.38258 * 119.87909 * 179.97438 * 3 2 1 5 5 C 1.37953 * 120.27078 * 0.12640 * 4 3 2 6 6 C 1.39358 * 120.19570 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.95782 * 179.97438 * 2 1 3 8 8 C 1.51565 * 131.57027 * 359.73205 * 7 2 1 9 9 H 1.09000 * 110.89977 * 314.60538 * 8 7 2 10 10 C 1.50696 * 110.75089 * 77.87375 * 8 7 2 11 11 H 1.08002 * 119.99150 * 358.40173 * 10 8 7 12 12 C 1.37877 * 120.00640 * 178.67153 * 10 8 7 13 13 N 1.31516 * 119.99661 * 6.32262 * 12 10 8 14 14 Si 1.86798 * 120.00316 * 186.31562 * 12 10 8 15 15 H 1.48503 * 109.47033 * 94.14866 * 14 12 10 16 16 H 1.48495 * 109.47230 * 214.15042 * 14 12 10 17 17 H 1.48499 * 109.47030 * 334.14957 * 14 12 10 18 18 C 1.54609 * 102.81361 * 196.20348 * 8 7 2 19 19 N 1.40038 * 129.95212 * 179.70966 * 6 5 4 20 20 C 1.46907 * 110.99763 * 40.09408 * 19 6 5 21 21 H 1.09003 * 109.46888 * 89.99957 * 1 2 3 22 22 H 1.09006 * 109.46844 * 209.99999 * 1 2 3 23 23 H 1.08997 * 109.47147 * 330.00003 * 1 2 3 24 24 H 1.07996 * 120.05876 * 0.02562 * 3 2 1 25 25 H 1.08009 * 119.86590 * 180.11039 * 4 3 2 26 26 H 1.07996 * 119.89972 * 180.02562 * 5 4 3 27 27 H 0.96992 * 120.00262 * 179.97438 * 13 12 10 28 28 H 1.09007 * 110.77432 * 92.67617 * 18 8 7 29 29 H 1.08999 * 110.77886 * 216.10232 * 18 8 7 30 30 H 1.08996 * 109.46966 * 180.02562 * 20 19 6 31 31 H 1.08998 * 109.46747 * 300.01830 * 20 19 6 32 32 H 1.08997 * 109.47155 * 60.01449 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1986 0.0000 4 6 3.5805 1.1966 0.0005 5 6 4.2742 0.0042 -0.0016 6 6 3.5855 -1.2073 -0.0037 7 6 2.1956 -1.1946 0.0005 8 6 1.7154 -2.6322 0.0065 9 1 0.9169 -2.7724 0.7351 10 6 1.2598 -3.0486 -1.3683 11 1 1.2822 -2.3392 -2.1824 12 6 0.8093 -4.3335 -1.5856 13 7 0.6592 -5.1579 -0.5720 14 14 0.4120 -4.9032 -3.3197 15 1 1.5984 -5.5804 -3.9022 16 1 -0.7295 -5.8520 -3.2796 17 1 0.0515 -3.7301 -4.1557 18 6 2.9815 -3.4149 0.4242 19 7 4.0744 -2.5196 -0.0114 20 6 5.2452 -2.6504 0.8662 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6583 2.1341 0.0004 25 1 4.1197 2.1325 0.0023 26 1 5.3542 0.0096 -0.0007 27 1 0.3420 -6.0616 -0.7247 28 1 3.0083 -3.5587 1.5044 29 1 3.0339 -4.3715 -0.0957 30 1 5.6050 -3.6789 0.8411 31 1 6.0338 -1.9813 0.5219 32 1 4.9657 -2.3878 1.8864 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = 29.234767 kcal Electronic energy + Delta-G solvation = -14635.681687 eV Core-core repulsion = 12367.770682 eV Total energy + Delta-G solvation = -2267.911005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88960 -36.19455 -33.54491 -31.84817 -30.21171 -28.22138 -26.09568 -25.42915 -23.94707 -21.52170 -20.34249 -19.18661 -16.46547 -15.64458 -14.99014 -14.87134 -14.45824 -14.19386 -13.18377 -12.98718 -12.85226 -12.48906 -11.96895 -11.67534 -11.57982 -11.39177 -11.11854 -11.00775 -10.84331 -10.59912 -10.44744 -10.21344 -9.44574 -9.27538 -9.04895 -8.46095 -7.78682 -6.87038 -6.06028 -4.08882 2.09272 2.19270 3.31027 3.37735 3.42271 4.34917 4.46743 4.70836 5.24211 5.42953 5.53273 5.63830 5.73696 5.82805 5.97760 6.05972 6.12047 6.16872 6.27033 6.34622 6.44738 6.54360 6.62098 6.78587 7.04337 7.16239 7.31009 7.37914 7.50488 7.74600 7.82865 7.88611 8.09125 8.33263 8.91989 9.54299 11.01694 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.011493 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.967100 B = 2435.770936 C = 2992.303482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.113 4.113 5 C -0.158 4.158 6 C 0.096 3.904 7 C -0.099 4.099 8 C 0.083 3.917 9 H 0.046 0.954 10 C -0.491 4.491 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.062 3.938 19 N -0.475 5.475 20 C 0.022 3.978 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 7.410 2.996 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.057 4.057 3 C -0.177 4.177 4 C -0.132 4.132 5 C -0.179 4.179 6 C -0.003 4.003 7 C -0.102 4.102 8 C 0.064 3.936 9 H 0.064 0.936 10 C -0.529 4.529 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.064 4.064 19 N -0.189 5.189 20 C -0.125 4.125 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.327 6.962 2.548 8.584 hybrid contribution -0.201 -0.263 -0.338 0.473 sum 4.126 6.699 2.210 8.172 Atomic orbital electron populations 1.20661 0.91707 1.01631 1.02133 1.19208 0.95770 0.91599 0.99153 1.20718 0.93979 0.96706 1.06295 1.20572 0.94129 0.96563 1.01889 1.20252 0.98579 0.90662 1.08412 1.19787 0.93817 0.89600 0.97056 1.21085 0.93017 0.96859 0.99225 1.18528 0.92849 0.84050 0.98136 0.93596 1.20849 1.41903 0.96506 0.93639 0.92386 1.24939 0.95171 0.96757 0.96986 1.69954 1.46474 1.06783 1.29913 0.86541 0.77850 0.78617 0.84828 1.20632 1.21296 1.19825 1.23401 0.89291 0.97548 0.96112 1.60468 1.08031 1.03100 1.47264 1.22457 0.93603 1.02117 0.94370 0.91424 0.91148 0.93054 0.87058 0.87005 0.87430 0.92850 0.95504 0.88188 0.91352 0.91851 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.90 36.01 0.36 -1.53 16 2 C -0.06 -1.14 5.87 -104.71 -0.61 -1.76 16 3 C -0.16 -2.77 9.71 -39.53 -0.38 -3.15 16 4 C -0.11 -1.90 10.02 -39.68 -0.40 -2.30 16 5 C -0.16 -2.91 9.53 -39.27 -0.37 -3.29 16 6 C 0.10 2.08 5.96 -83.41 -0.50 1.58 16 7 C -0.10 -2.26 5.35 -104.04 -0.56 -2.82 16 8 C 0.08 2.10 2.42 -91.65 -0.22 1.88 16 9 H 0.05 1.24 7.81 -51.93 -0.41 0.83 16 10 C -0.49 -13.48 8.56 -34.44 -0.29 -13.78 16 11 H 0.06 1.65 7.78 -52.49 -0.41 1.24 16 12 C 0.06 1.72 5.02 -17.82 -0.09 1.63 16 13 N -0.89 -24.95 12.51 55.43 0.69 -24.25 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.06 1.47 6.13 -2.46 -0.02 1.45 16 19 N -0.48 -10.32 5.30 -176.89 -0.94 -11.26 16 20 C 0.02 0.37 9.16 60.07 0.55 0.92 16 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 23 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 24 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 26 H 0.11 1.73 7.38 -52.49 -0.39 1.35 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.03 0.60 7.84 -51.93 -0.41 0.19 16 29 H 0.10 2.59 7.02 -51.93 -0.36 2.23 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.95 7.31 -51.93 -0.38 0.57 16 32 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 LS Contribution 265.81 15.07 4.01 4.01 Total: -1.00 -28.76 265.81 -8.21 -36.97 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.41 Total: -0.66 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.54 Total: -21.16 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.24 Total: -35.52 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.76 -8.21 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.201 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds