Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38347 * 119.96105 * 2 1 4 4 C 1.38258 * 119.87909 * 179.97438 * 3 2 1 5 5 C 1.37953 * 120.27078 * 0.12640 * 4 3 2 6 6 C 1.39358 * 120.19570 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.95782 * 179.97438 * 2 1 3 8 8 C 1.51565 * 131.57027 * 359.73205 * 7 2 1 9 9 H 1.09000 * 110.89977 * 314.60538 * 8 7 2 10 10 C 1.50696 * 110.75089 * 77.87375 * 8 7 2 11 11 H 1.08002 * 119.99150 * 358.40173 * 10 8 7 12 12 C 1.37877 * 120.00640 * 178.67153 * 10 8 7 13 13 N 1.31516 * 119.99661 * 6.32262 * 12 10 8 14 14 Si 1.86798 * 120.00316 * 186.31562 * 12 10 8 15 15 H 1.48503 * 109.47033 * 94.14866 * 14 12 10 16 16 H 1.48495 * 109.47230 * 214.15042 * 14 12 10 17 17 H 1.48499 * 109.47030 * 334.14957 * 14 12 10 18 18 C 1.54609 * 102.81361 * 196.20348 * 8 7 2 19 19 N 1.40038 * 129.95212 * 179.70966 * 6 5 4 20 20 C 1.46907 * 110.99763 * 40.09408 * 19 6 5 21 21 H 1.09003 * 109.46888 * 89.99957 * 1 2 3 22 22 H 1.09006 * 109.46844 * 209.99999 * 1 2 3 23 23 H 1.08997 * 109.47147 * 330.00003 * 1 2 3 24 24 H 1.07996 * 120.05876 * 0.02562 * 3 2 1 25 25 H 1.08009 * 119.86590 * 180.11039 * 4 3 2 26 26 H 1.07996 * 119.89972 * 180.02562 * 5 4 3 27 27 H 0.96992 * 120.00262 * 179.97438 * 13 12 10 28 28 H 1.09007 * 110.77432 * 92.67617 * 18 8 7 29 29 H 1.08999 * 110.77886 * 216.10232 * 18 8 7 30 30 H 1.08996 * 109.46966 * 180.02562 * 20 19 6 31 31 H 1.08998 * 109.46747 * 300.01830 * 20 19 6 32 32 H 1.08997 * 109.47155 * 60.01449 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1986 0.0000 4 6 3.5805 1.1966 0.0005 5 6 4.2742 0.0042 -0.0016 6 6 3.5855 -1.2073 -0.0037 7 6 2.1956 -1.1946 0.0005 8 6 1.7154 -2.6322 0.0065 9 1 0.9169 -2.7724 0.7351 10 6 1.2598 -3.0486 -1.3683 11 1 1.2822 -2.3392 -2.1824 12 6 0.8093 -4.3335 -1.5856 13 7 0.6592 -5.1579 -0.5720 14 14 0.4120 -4.9032 -3.3197 15 1 1.5984 -5.5804 -3.9022 16 1 -0.7295 -5.8520 -3.2796 17 1 0.0515 -3.7301 -4.1557 18 6 2.9815 -3.4149 0.4242 19 7 4.0744 -2.5196 -0.0114 20 6 5.2452 -2.6504 0.8662 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6583 2.1341 0.0004 25 1 4.1197 2.1325 0.0023 26 1 5.3542 0.0096 -0.0007 27 1 0.3420 -6.0616 -0.7247 28 1 3.0083 -3.5587 1.5044 29 1 3.0339 -4.3715 -0.0957 30 1 5.6050 -3.6789 0.8411 31 1 6.0338 -1.9813 0.5219 32 1 4.9657 -2.3878 1.8864 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = 12.462697 kcal Electronic energy + Delta-G solvation = -14636.408979 eV Core-core repulsion = 12367.770682 eV Total energy + Delta-G solvation = -2268.638296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47147 -37.71567 -35.41662 -33.55397 -31.81552 -29.84698 -27.78230 -27.00231 -25.69806 -23.21449 -21.88478 -20.80498 -18.48272 -17.25338 -16.66566 -16.55041 -16.02298 -15.90775 -14.62793 -14.54667 -14.38886 -14.17992 -13.62200 -13.38268 -13.09378 -12.98127 -12.87514 -12.67376 -12.43192 -12.32716 -12.27052 -11.86429 -11.31327 -11.15818 -10.61839 -10.54434 -9.31210 -8.48354 -8.12776 -6.25563 0.62387 0.70657 1.38398 1.40363 1.50334 2.41090 2.89066 3.09952 3.18173 3.94547 4.19664 4.25647 4.32693 4.36168 4.51521 4.57124 4.62724 4.74224 4.83541 4.88022 4.89950 4.99521 5.02973 5.29357 5.35882 5.51887 5.62108 5.71671 5.77712 5.94453 6.04899 6.20606 6.34387 6.57063 6.78563 7.40290 8.91310 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.011493 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.967100 B = 2435.770936 C = 2992.303482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.100 4.100 5 C -0.157 4.157 6 C 0.074 3.926 7 C -0.141 4.141 8 C 0.081 3.919 9 H 0.011 0.989 10 C -0.504 4.504 11 H 0.041 0.959 12 C 0.020 3.980 13 N -0.917 5.917 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.279 1.279 17 H -0.272 1.272 18 C 0.073 3.927 19 N -0.492 5.492 20 C 0.021 3.979 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.148 0.852 25 H 0.157 0.843 26 H 0.135 0.865 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 9.728 2.606 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.172 4.172 4 C -0.119 4.119 5 C -0.178 4.178 6 C -0.025 4.025 7 C -0.144 4.144 8 C 0.062 3.938 9 H 0.029 0.971 10 C -0.541 4.541 11 H 0.059 0.941 12 C -0.179 4.179 13 N -0.556 5.556 14 Si 0.778 3.222 15 H -0.203 1.203 16 H -0.204 1.204 17 H -0.196 1.196 18 C -0.053 4.053 19 N -0.206 5.206 20 C -0.125 4.125 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.165 0.835 25 H 0.175 0.825 26 H 0.153 0.847 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.560 9.292 2.163 11.043 hybrid contribution -0.562 -0.881 -0.177 1.060 sum 4.998 8.412 1.986 9.984 Atomic orbital electron populations 1.20639 0.91015 1.02132 1.01939 1.19578 0.96728 0.91940 0.99243 1.21139 0.94723 0.96822 1.04493 1.21122 0.94043 0.97713 0.98983 1.20642 1.00074 0.89847 1.07263 1.20060 0.93613 0.90391 0.98391 1.21058 0.94229 0.96207 1.02862 1.18323 0.92443 0.86950 0.96076 0.97124 1.20982 1.42294 0.96543 0.94330 0.94078 1.25633 0.95081 0.96781 1.00439 1.70049 1.47011 1.06998 1.31570 0.85627 0.77822 0.78158 0.80581 1.20302 1.20392 1.19633 1.23012 0.90049 0.96574 0.95660 1.60424 1.08305 1.03193 1.48668 1.22569 0.92459 1.03455 0.93994 0.91905 0.93748 0.89405 0.83462 0.82496 0.84716 0.92690 0.95251 0.91204 0.90519 0.89316 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.61 9.90 71.24 0.71 -2.90 16 2 C -0.07 -2.93 5.87 -19.92 -0.12 -3.05 16 3 C -0.15 -4.80 9.71 22.30 0.22 -4.58 16 4 C -0.10 -2.91 10.02 22.21 0.22 -2.69 16 5 C -0.16 -5.29 9.53 22.47 0.21 -5.07 16 6 C 0.07 3.13 5.96 38.28 0.23 3.36 16 7 C -0.14 -6.53 5.35 -19.49 -0.10 -6.63 16 8 C 0.08 4.30 2.42 -11.46 -0.03 4.27 16 9 H 0.01 0.63 7.81 -2.39 -0.02 0.61 16 10 C -0.50 -28.86 8.56 25.60 0.22 -28.64 16 11 H 0.04 2.43 7.78 -2.91 -0.02 2.40 16 12 C 0.02 1.11 5.02 84.65 0.43 1.53 16 13 N -0.92 -53.20 12.51 21.45 0.27 -52.93 16 14 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 C 0.07 3.63 6.13 86.67 0.53 4.16 16 19 N -0.49 -21.44 5.30 -713.55 -3.78 -25.22 16 20 C 0.02 0.70 9.16 127.69 1.17 1.87 16 21 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 22 H 0.04 1.78 7.47 -2.38 -0.02 1.76 16 23 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 24 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 25 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 26 H 0.14 3.73 7.38 -2.91 -0.02 3.71 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.03 1.38 7.84 -2.38 -0.02 1.36 16 29 H 0.07 3.82 7.02 -2.39 -0.02 3.80 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.42 7.31 -2.39 -0.02 2.41 16 32 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 Total: -1.00 -64.47 265.81 3.29 -61.18 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.09 Total: 8.51 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.68 Total: -38.37 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.52 Total: -78.15 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.47 3.29 -61.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.646 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds