Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.81255 * 2 1 4 4 C 1.53329 * 109.64122 * 239.47404 * 2 1 3 5 5 C 1.52772 * 108.35724 * 170.48199 * 4 2 1 6 6 C 1.50491 * 110.56196 * 50.85983 * 5 4 2 7 7 C 1.39184 * 117.97865 * 162.40297 * 6 5 4 8 8 C 1.38405 * 118.86686 * 179.75894 * 7 6 5 9 9 C 1.38232 * 118.84354 * 359.95562 * 8 7 6 10 10 N 1.31512 * 120.61486 * 0.10941 * 9 8 7 11 11 C 1.32702 * 122.39527 * 0.07863 * 10 9 8 12 12 C 1.50720 * 117.56363 * 179.31210 * 11 10 9 13 13 H 1.09004 * 109.25787 * 282.64308 * 12 11 10 14 14 C 1.50694 * 109.25756 * 42.08351 * 12 11 10 15 15 H 1.08003 * 119.99492 * 56.10675 * 14 12 11 16 16 C 1.37874 * 120.00388 * 236.10665 * 14 12 11 17 17 N 1.31516 * 120.00359 * 177.87977 * 16 14 12 18 18 Si 1.86799 * 119.99993 * 357.87958 * 16 14 12 19 19 H 1.48501 * 109.47094 * 84.84092 * 18 16 14 20 20 H 1.48494 * 109.47461 * 204.84254 * 18 16 14 21 21 H 1.48507 * 109.47012 * 324.84393 * 18 16 14 22 22 H 1.09004 * 109.47409 * 180.52743 * 1 2 3 23 23 H 1.09000 * 109.47448 * 300.52654 * 1 2 3 24 24 H 1.09000 * 109.47308 * 60.52787 * 1 2 3 25 25 H 1.08993 * 109.68780 * 290.20119 * 4 2 1 26 26 H 1.09001 * 109.68234 * 50.72994 * 4 2 1 27 27 H 1.09007 * 109.25537 * 171.14142 * 5 4 2 28 28 H 1.09001 * 109.25975 * 290.57532 * 5 4 2 29 29 H 1.08005 * 120.56562 * 359.78564 * 7 6 5 30 30 H 1.08003 * 120.57309 * 179.97438 * 8 7 6 31 31 H 1.08005 * 119.69423 * 180.13023 * 9 8 7 32 32 H 0.96992 * 120.00186 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0453 -0.7335 -1.2439 5 6 3.5539 -0.5130 -1.3420 6 6 4.2224 -0.8434 -0.0349 7 6 5.5971 -1.0613 -0.0413 8 6 6.2316 -1.3615 1.1516 9 6 5.4779 -1.4334 2.3081 10 7 4.1802 -1.2226 2.2761 11 6 3.5340 -0.9361 1.1530 12 6 2.0434 -0.7306 1.2390 13 1 1.5505 -1.6999 1.3146 14 6 1.7241 0.0854 2.4651 15 1 2.1834 1.0529 2.6044 16 6 0.8457 -0.4032 3.4089 17 7 0.5991 0.2901 4.4989 18 14 0.0060 -2.0498 3.1394 19 1 0.8973 -3.1422 3.6057 20 1 -1.2660 -2.0880 3.9047 21 1 -0.2809 -2.2284 1.6933 22 1 -0.3634 -1.0276 0.0095 23 1 -0.3634 0.5220 0.8852 24 1 -0.3634 0.5056 -0.8947 25 1 1.8350 -1.7992 -1.1552 26 1 1.5569 -0.3356 -2.1334 27 1 3.9604 -1.1524 -2.1256 28 1 3.7493 0.5297 -1.5924 29 1 6.1591 -0.9969 -0.9613 30 1 7.2971 -1.5361 1.1783 31 1 5.9593 -1.6646 3.2469 32 1 -0.0191 -0.0534 5.1626 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = 16.586282 kcal Electronic energy + Delta-G solvation = -14758.750375 eV Core-core repulsion = 12490.290891 eV Total energy + Delta-G solvation = -2268.459484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.93564 -36.57358 -33.43357 -31.83304 -30.85865 -29.43359 -26.74374 -24.42754 -22.98179 -21.46244 -20.94563 -18.84415 -16.91878 -15.92828 -15.64211 -14.88460 -14.24999 -13.70210 -13.29222 -13.13400 -12.87758 -12.60177 -12.42389 -12.21220 -11.58839 -11.36712 -11.05585 -10.76875 -10.70068 -10.37701 -9.86416 -9.60739 -9.46744 -9.31061 -8.92535 -8.44877 -8.36033 -7.95453 -5.97601 -3.94302 1.81469 1.94641 3.35756 3.41611 3.44288 4.50222 4.52917 5.01330 5.20389 5.26116 5.38951 5.46572 5.50186 5.63660 5.73819 5.81337 6.09335 6.17937 6.23350 6.26710 6.40424 6.42172 6.55899 6.62396 6.70470 6.72910 6.90779 7.09032 7.22841 7.30642 7.47088 7.77694 8.57081 8.95223 9.08400 9.65111 11.16322 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027217 B = 0.013654 C = 0.010328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.537956 B = 2050.194132 C = 2710.398669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.066 0.934 4 C -0.121 4.121 5 C -0.067 4.067 6 C -0.151 4.151 7 C -0.087 4.087 8 C -0.202 4.202 9 C 0.092 3.908 10 N -0.454 5.454 11 C 0.171 3.829 12 C 0.055 3.945 13 H 0.056 0.944 14 C -0.478 4.478 15 H 0.070 0.930 16 C 0.080 3.920 17 N -0.901 5.901 18 Si 0.867 3.133 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.260 1.260 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -3.374 -10.776 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.105 4.105 6 C -0.153 4.153 7 C -0.113 4.113 8 C -0.223 4.223 9 C -0.068 4.068 10 N -0.161 5.161 11 C 0.036 3.964 12 C 0.036 3.964 13 H 0.073 0.927 14 C -0.516 4.516 15 H 0.088 0.912 16 C -0.121 4.121 17 N -0.539 5.539 18 Si 0.696 3.304 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.185 1.185 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.318 -3.420 -9.812 11.672 hybrid contribution 0.354 -0.832 -0.668 1.124 sum 5.672 -4.252 -10.479 12.652 Atomic orbital electron populations 1.21748 0.95543 1.00961 1.01167 1.21233 0.95576 0.99461 0.93500 0.91566 1.21757 0.94272 1.00849 0.98991 1.20300 0.95839 1.01025 0.93317 1.20604 0.94136 1.03740 0.96840 1.21410 0.94099 0.97913 0.97927 1.21919 1.00516 1.05475 0.94349 1.22738 0.90515 0.96057 0.97522 1.67787 1.08939 1.09525 1.29840 1.22060 0.98681 0.89655 0.86043 1.18278 0.85352 0.97146 0.95635 0.92664 1.20543 1.25167 1.03911 1.01978 0.91159 1.24950 0.96278 0.96306 0.94570 1.69879 1.36222 1.38567 1.09251 0.87065 0.79109 0.85686 0.78590 1.20269 1.21782 1.18538 0.93713 0.91050 0.94379 0.92369 0.92244 0.91822 0.91199 0.86184 0.86075 0.83873 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.66 37.15 0.32 -2.30 16 2 C -0.08 -1.56 2.16 -90.59 -0.20 -1.76 16 3 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 4 C -0.12 -1.97 5.29 -26.68 -0.14 -2.11 16 5 C -0.07 -1.03 5.68 -28.10 -0.16 -1.19 16 6 C -0.15 -2.80 5.74 -104.60 -0.60 -3.40 16 7 C -0.09 -1.40 9.75 -39.17 -0.38 -1.79 16 8 C -0.20 -3.22 10.12 -39.52 -0.40 -3.62 16 9 C 0.09 1.74 11.19 -17.69 -0.20 1.54 16 10 N -0.45 -10.65 9.53 -9.51 -0.09 -10.74 16 11 C 0.17 3.85 6.19 -82.44 -0.51 3.34 16 12 C 0.06 1.31 1.68 -93.06 -0.16 1.15 16 13 H 0.06 1.36 4.64 -51.93 -0.24 1.12 16 14 C -0.48 -13.38 7.44 -34.44 -0.26 -13.63 16 15 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 16 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 18 Si 0.87 21.81 26.73 -169.99 -4.54 17.26 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.05 5.37 56.52 0.30 -5.74 16 22 H 0.04 0.85 6.93 -51.93 -0.36 0.49 16 23 H 0.07 1.53 7.54 -51.93 -0.39 1.14 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -31.36 257.55 -7.20 -38.56 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.45 Total: -0.43 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.78 Total: -21.55 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.68 Total: -37.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.54 Total: 17.26 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.36 -7.20 -38.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.145 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds