Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.81172 * 2 1 4 4 C 1.53326 * 109.64486 * 239.46970 * 2 1 3 5 5 C 1.52763 * 108.35504 * 170.45722 * 4 2 1 6 6 C 1.50496 * 110.56215 * 50.83882 * 5 4 2 7 7 C 1.39183 * 117.97171 * 162.69976 * 6 5 4 8 8 C 1.38412 * 118.86645 * 179.71850 * 7 6 5 9 9 C 1.38234 * 118.83987 * 0.16060 * 8 7 6 10 10 N 1.31517 * 120.61346 * 359.57971 * 9 8 7 11 11 C 1.32704 * 122.39831 * 0.59773 * 10 9 8 12 12 C 1.50723 * 117.56409 * 179.33246 * 11 10 9 13 13 H 1.08999 * 109.22366 * 42.03370 * 12 11 10 14 14 C 1.50697 * 109.25518 * 282.57765 * 12 11 10 15 15 H 1.08005 * 119.99883 * 238.92009 * 14 12 11 16 16 C 1.37881 * 120.00478 * 58.91407 * 14 12 11 17 17 N 1.31509 * 119.99526 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00132 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47028 * 60.00348 * 18 16 14 20 20 H 1.48498 * 109.46910 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47324 * 300.00351 * 18 16 14 22 22 H 1.09001 * 109.46808 * 180.53015 * 1 2 3 23 23 H 1.09001 * 109.47062 * 300.52863 * 1 2 3 24 24 H 1.08999 * 109.46715 * 60.53129 * 1 2 3 25 25 H 1.08997 * 109.68322 * 50.73753 * 4 2 1 26 26 H 1.08999 * 109.71438 * 290.19277 * 4 2 1 27 27 H 1.08996 * 109.26192 * 290.55168 * 5 4 2 28 28 H 1.09003 * 109.25452 * 171.11738 * 5 4 2 29 29 H 1.08004 * 120.56859 * 359.70311 * 7 6 5 30 30 H 1.08002 * 120.57700 * 179.87652 * 8 7 6 31 31 H 1.07998 * 119.69478 * 179.84566 * 9 8 7 32 32 H 0.97000 * 120.00065 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0256 0.0000 4 6 2.0455 -0.7335 -1.2438 5 6 3.5538 -0.5125 -1.3421 6 6 4.2226 -0.8418 -0.0348 7 6 5.5984 -1.0530 -0.0403 8 6 6.2334 -1.3512 1.1529 9 6 5.4784 -1.4323 2.3080 10 7 4.1806 -1.2217 2.2760 11 6 3.5340 -0.9365 1.1527 12 6 2.0434 -0.7305 1.2390 13 1 1.8135 -0.1398 2.1257 14 6 1.3618 -2.0704 1.3441 15 1 0.6367 -2.3672 0.6006 16 6 1.6638 -2.9176 2.3891 17 7 2.5464 -2.5561 3.2945 18 14 0.8184 -4.5782 2.5196 19 1 1.1177 -5.3826 1.3077 20 1 1.3139 -5.2927 3.7234 21 1 -0.6489 -4.3792 2.6317 22 1 -0.3633 -1.0277 0.0095 23 1 -0.3633 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 1.5572 -0.3357 -2.1334 26 1 1.8355 -1.7995 -1.1554 27 1 3.7488 0.5301 -1.5931 28 1 3.9606 -1.1522 -2.1253 29 1 6.1608 -0.9855 -0.9598 30 1 7.2994 -1.5222 1.1801 31 1 5.9593 -1.6667 3.2461 32 1 2.7587 -3.1519 4.0300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = 33.678259 kcal Electronic energy + Delta-G solvation = -14965.908946 eV Core-core repulsion = 12698.190625 eV Total energy + Delta-G solvation = -2267.718321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49880 -36.32162 -33.22026 -31.52359 -30.45404 -28.84557 -26.36368 -24.25685 -22.75541 -21.31306 -20.93667 -18.61373 -16.27969 -15.40903 -15.19066 -14.52751 -14.28828 -13.41316 -13.22277 -12.94799 -12.70785 -12.22370 -11.86963 -11.73518 -11.23757 -11.08351 -10.90496 -10.74340 -10.59809 -10.38000 -10.03456 -9.62879 -9.13445 -9.07778 -8.52527 -8.24138 -7.77084 -7.52635 -5.69082 -3.94494 2.29951 2.45288 3.35510 3.40200 3.42451 4.49367 5.09023 5.36137 5.41633 5.63899 5.69365 5.73651 5.87539 5.95783 6.03608 6.13667 6.24210 6.41715 6.45162 6.54539 6.63259 6.73301 6.82610 6.97653 7.03165 7.10403 7.21369 7.31114 7.36579 7.76773 7.88574 8.07862 8.40378 8.99853 9.58141 9.66669 11.15747 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.015918 C = 0.010912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.809691 B = 1758.538104 C = 2565.334983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.045 0.955 4 C -0.109 4.109 5 C -0.064 4.064 6 C -0.155 4.155 7 C -0.102 4.102 8 C -0.213 4.213 9 C 0.077 3.923 10 N -0.388 5.388 11 C 0.178 3.822 12 C 0.094 3.906 13 H 0.041 0.959 14 C -0.519 4.519 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.818 5.818 18 Si 0.876 3.124 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 3.450 -6.139 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 H 0.064 0.936 4 C -0.147 4.147 5 C -0.102 4.102 6 C -0.157 4.157 7 C -0.129 4.129 8 C -0.233 4.233 9 C -0.083 4.083 10 N -0.095 5.095 11 C 0.042 3.958 12 C 0.075 3.925 13 H 0.059 0.941 14 C -0.557 4.557 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.452 5.452 18 Si 0.704 3.296 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.202 1.202 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.358 3.341 -5.158 6.583 hybrid contribution 0.469 -1.284 -0.660 1.518 sum 2.827 2.057 -5.818 6.788 Atomic orbital electron populations 1.21724 0.95664 1.02365 0.99133 1.21087 0.95391 0.97302 0.96178 0.93622 1.21580 0.93795 1.02233 0.97081 1.20244 0.96122 0.99971 0.93844 1.20493 0.93855 1.04611 0.96743 1.21223 0.94301 0.99907 0.97424 1.21837 0.99945 1.06757 0.94769 1.22752 0.91221 0.97646 0.96719 1.68398 1.06174 1.05607 1.29358 1.22067 0.97580 0.89648 0.86483 1.17679 0.85277 0.96432 0.93126 0.94102 1.20915 1.23274 1.01444 1.10041 0.91794 1.25165 0.95117 0.97754 0.96501 1.70240 1.28615 1.34990 1.11361 0.86931 0.80199 0.85212 0.77291 1.20649 1.21476 1.20228 0.91382 0.93446 0.95059 0.93371 0.90660 0.92223 0.92344 0.87139 0.87189 0.85069 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.83 37.16 0.33 -2.10 16 2 C -0.08 -1.63 2.52 -90.59 -0.23 -1.86 16 3 H 0.05 0.88 8.10 -51.92 -0.42 0.46 16 4 C -0.11 -2.03 5.24 -26.68 -0.14 -2.17 16 5 C -0.06 -1.14 5.68 -28.10 -0.16 -1.30 16 6 C -0.15 -3.30 5.74 -104.60 -0.60 -3.90 16 7 C -0.10 -1.98 9.75 -39.17 -0.38 -2.36 16 8 C -0.21 -4.09 10.12 -39.52 -0.40 -4.49 16 9 C 0.08 1.70 11.19 -17.69 -0.20 1.50 16 10 N -0.39 -9.94 6.98 -9.51 -0.07 -10.01 16 11 C 0.18 4.38 5.66 -82.44 -0.47 3.91 16 12 C 0.09 2.32 2.11 -93.06 -0.20 2.12 16 13 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.52 -13.75 6.94 -34.44 -0.24 -13.99 16 15 H 0.06 1.65 5.67 -52.48 -0.30 1.35 16 16 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 17 N -0.82 -23.35 10.06 55.43 0.56 -22.80 16 18 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.07 1.34 6.05 -51.93 -0.31 1.02 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.07 1.55 6.95 -51.93 -0.36 1.19 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 255.04 15.07 3.84 3.84 Total: -1.00 -29.09 255.04 -7.79 -36.89 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.33 Total: -1.11 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.78 Total: -23.05 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.49 Total: -32.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.09 -7.79 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.566 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds