Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.81172 * 2 1 4 4 C 1.53326 * 109.64486 * 239.46970 * 2 1 3 5 5 C 1.52763 * 108.35504 * 170.45722 * 4 2 1 6 6 C 1.50496 * 110.56215 * 50.83882 * 5 4 2 7 7 C 1.39183 * 117.97171 * 162.69976 * 6 5 4 8 8 C 1.38412 * 118.86645 * 179.71850 * 7 6 5 9 9 C 1.38234 * 118.83987 * 0.16060 * 8 7 6 10 10 N 1.31517 * 120.61346 * 359.57971 * 9 8 7 11 11 C 1.32704 * 122.39831 * 0.59773 * 10 9 8 12 12 C 1.50723 * 117.56409 * 179.33246 * 11 10 9 13 13 H 1.08999 * 109.22366 * 42.03370 * 12 11 10 14 14 C 1.50697 * 109.25518 * 282.57765 * 12 11 10 15 15 H 1.08005 * 119.99883 * 238.92009 * 14 12 11 16 16 C 1.37881 * 120.00478 * 58.91407 * 14 12 11 17 17 N 1.31509 * 119.99526 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00132 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47028 * 60.00348 * 18 16 14 20 20 H 1.48498 * 109.46910 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47324 * 300.00351 * 18 16 14 22 22 H 1.09001 * 109.46808 * 180.53015 * 1 2 3 23 23 H 1.09001 * 109.47062 * 300.52863 * 1 2 3 24 24 H 1.08999 * 109.46715 * 60.53129 * 1 2 3 25 25 H 1.08997 * 109.68322 * 50.73753 * 4 2 1 26 26 H 1.08999 * 109.71438 * 290.19277 * 4 2 1 27 27 H 1.08996 * 109.26192 * 290.55168 * 5 4 2 28 28 H 1.09003 * 109.25452 * 171.11738 * 5 4 2 29 29 H 1.08004 * 120.56859 * 359.70311 * 7 6 5 30 30 H 1.08002 * 120.57700 * 179.87652 * 8 7 6 31 31 H 1.07998 * 119.69478 * 179.84566 * 9 8 7 32 32 H 0.97000 * 120.00065 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0256 0.0000 4 6 2.0455 -0.7335 -1.2438 5 6 3.5538 -0.5125 -1.3421 6 6 4.2226 -0.8418 -0.0348 7 6 5.5984 -1.0530 -0.0403 8 6 6.2334 -1.3512 1.1529 9 6 5.4784 -1.4323 2.3080 10 7 4.1806 -1.2217 2.2760 11 6 3.5340 -0.9365 1.1527 12 6 2.0434 -0.7305 1.2390 13 1 1.8135 -0.1398 2.1257 14 6 1.3618 -2.0704 1.3441 15 1 0.6367 -2.3672 0.6006 16 6 1.6638 -2.9176 2.3891 17 7 2.5464 -2.5561 3.2945 18 14 0.8184 -4.5782 2.5196 19 1 1.1177 -5.3826 1.3077 20 1 1.3139 -5.2927 3.7234 21 1 -0.6489 -4.3792 2.6317 22 1 -0.3633 -1.0277 0.0095 23 1 -0.3633 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 1.5572 -0.3357 -2.1334 26 1 1.8355 -1.7995 -1.1554 27 1 3.7488 0.5301 -1.5931 28 1 3.9606 -1.1522 -2.1253 29 1 6.1608 -0.9855 -0.9598 30 1 7.2994 -1.5222 1.1801 31 1 5.9593 -1.6667 3.2461 32 1 2.7587 -3.1519 4.0300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = 17.831118 kcal Electronic energy + Delta-G solvation = -14966.596130 eV Core-core repulsion = 12698.190625 eV Total energy + Delta-G solvation = -2268.405504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13236 -37.94133 -35.01977 -33.31772 -32.04703 -30.50107 -28.07375 -26.10335 -24.34341 -22.96167 -22.50341 -20.32845 -18.13566 -17.02797 -16.85467 -16.43011 -15.93048 -14.99004 -14.83113 -14.68454 -14.30232 -13.78995 -13.46105 -13.38773 -12.98155 -12.72181 -12.65508 -12.55076 -12.23070 -12.07275 -11.83482 -11.18351 -10.85594 -10.80464 -10.40703 -10.06931 -9.46359 -9.19459 -7.73479 -6.04590 0.65589 0.88660 1.40228 1.40856 1.46578 2.47157 3.31323 3.42565 3.88420 4.16294 4.16622 4.26633 4.40213 4.45974 4.51581 4.64062 4.81418 4.95360 4.99820 5.08936 5.13307 5.20974 5.32069 5.38147 5.47030 5.59595 5.62095 5.62912 5.71548 5.88357 5.99550 6.32246 6.44297 6.96943 7.56180 7.92784 9.08069 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.015918 C = 0.010912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.809691 B = 1758.538104 C = 2565.334983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 H 0.054 0.946 4 C -0.104 4.104 5 C -0.063 4.063 6 C -0.161 4.161 7 C -0.103 4.103 8 C -0.198 4.198 9 C 0.049 3.951 10 N -0.436 5.436 11 C 0.138 3.862 12 C 0.091 3.909 13 H -0.008 1.008 14 C -0.523 4.523 15 H 0.066 0.934 16 C 0.010 3.990 17 N -0.844 5.844 18 Si 0.932 3.068 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.269 1.269 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 3.613 -8.865 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.141 4.141 5 C -0.100 4.100 6 C -0.164 4.164 7 C -0.128 4.128 8 C -0.218 4.218 9 C -0.111 4.111 10 N -0.144 5.144 11 C 0.003 3.997 12 C 0.072 3.928 13 H 0.009 0.991 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.480 5.480 18 Si 0.758 3.242 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.195 1.195 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.271 3.507 -7.896 9.238 hybrid contribution 0.246 -1.272 0.197 1.310 sum 3.517 2.236 -7.698 8.754 Atomic orbital electron populations 1.21672 0.94674 1.01614 1.00466 1.21070 0.96286 0.97333 0.95152 0.92759 1.21522 0.94890 1.00414 0.97287 1.20349 0.95167 1.02027 0.92499 1.20884 0.95111 1.03396 0.96964 1.21724 0.93681 0.98377 0.99061 1.22223 1.01726 1.04148 0.93689 1.23063 0.90685 0.98705 0.98648 1.68197 1.08190 1.06937 1.31048 1.22040 0.97546 0.92252 0.87904 1.17616 0.86488 0.95299 0.93363 0.99052 1.21224 1.23111 1.02152 1.09624 0.91604 1.25857 0.95940 1.00812 0.96708 1.70481 1.30141 1.35578 1.11764 0.86042 0.79537 0.81725 0.76850 1.20428 1.21927 1.19460 0.93049 0.94403 0.91453 0.89727 0.93261 0.89652 0.89813 0.82795 0.83143 0.84153 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.83 71.98 0.64 -3.95 16 2 C -0.08 -3.15 2.52 -10.78 -0.03 -3.18 16 3 H 0.05 2.03 8.10 -2.38 -0.02 2.01 16 4 C -0.10 -3.56 5.24 30.62 0.16 -3.40 16 5 C -0.06 -2.01 5.68 29.70 0.17 -1.84 16 6 C -0.16 -6.56 5.74 -19.85 -0.11 -6.68 16 7 C -0.10 -3.59 9.75 22.54 0.22 -3.37 16 8 C -0.20 -7.09 10.12 22.31 0.23 -6.87 16 9 C 0.05 2.17 11.19 84.74 0.95 3.11 16 10 N -0.44 -23.04 6.98 -184.01 -1.28 -24.33 16 11 C 0.14 6.89 5.66 42.28 0.24 7.13 16 12 C 0.09 4.66 2.11 -12.37 -0.03 4.64 16 13 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 14 C -0.52 -28.51 6.94 25.60 0.18 -28.33 16 15 H 0.07 3.46 5.67 -2.91 -0.02 3.45 16 16 C 0.01 0.57 5.29 84.66 0.45 1.02 16 17 N -0.84 -50.41 10.06 21.45 0.22 -50.20 16 18 Si 0.93 44.78 29.54 68.60 2.03 46.81 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H 0.05 2.00 6.05 -2.39 -0.01 1.99 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.29 8.13 -2.39 -0.02 2.28 16 26 H 0.05 1.95 6.95 -2.39 -0.02 1.93 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 29 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 32 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -66.00 255.04 5.11 -60.89 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.10 Total: 8.54 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 3.06 Total: -41.71 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.07 Total: -74.53 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.00 5.11 -60.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.718 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds