Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.80762 * 2 1 4 4 C 1.53328 * 109.63711 * 120.51893 * 2 1 3 5 5 C 1.52767 * 108.38430 * 49.83095 * 4 2 1 6 6 C 1.50584 * 110.50065 * 50.88823 * 5 4 2 7 7 C 1.39183 * 117.95649 * 162.68899 * 6 5 4 8 8 C 1.38409 * 118.86737 * 179.46401 * 7 6 5 9 9 C 1.38237 * 118.83850 * 359.97438 * 8 7 6 10 10 N 1.31513 * 120.61474 * 0.13597 * 9 8 7 11 11 C 1.32698 * 122.39839 * 359.97438 * 10 9 8 12 12 C 1.50726 * 117.56423 * 179.71606 * 11 10 9 13 13 H 1.08999 * 109.25505 * 282.44430 * 12 11 10 14 14 C 1.50699 * 109.22414 * 41.89870 * 12 11 10 15 15 H 1.08010 * 119.99917 * 121.08011 * 14 12 11 16 16 C 1.37873 * 120.00008 * 301.07545 * 14 12 11 17 17 N 1.31520 * 120.00170 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00017 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47169 * 119.99810 * 18 16 14 21 21 H 1.48504 * 109.46662 * 239.99793 * 18 16 14 22 22 H 1.08995 * 109.47375 * 299.48423 * 1 2 3 23 23 H 1.09005 * 109.46981 * 59.48301 * 1 2 3 24 24 H 1.09000 * 109.47091 * 179.47920 * 1 2 3 25 25 H 1.09002 * 109.68834 * 169.56572 * 4 2 1 26 26 H 1.09002 * 109.68826 * 290.09589 * 4 2 1 27 27 H 1.09002 * 109.26558 * 171.20062 * 5 4 2 28 28 H 1.09010 * 109.26122 * 290.64844 * 5 4 2 29 29 H 1.08009 * 120.56500 * 359.44060 * 7 6 5 30 30 H 1.07997 * 120.57692 * 179.97438 * 8 7 6 31 31 H 1.08004 * 119.69151 * 180.13337 * 9 8 7 32 32 H 0.96995 * 119.99829 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8993 1.0255 0.0000 4 6 2.0453 -0.7333 1.2440 5 6 1.3264 -2.0777 1.3431 6 6 1.4117 -2.8190 0.0352 7 6 1.1452 -4.1850 0.0408 8 6 1.2071 -4.8829 -1.1529 9 6 1.5311 -4.1984 -2.3094 10 7 1.7789 -2.9072 -2.2763 11 6 1.7322 -2.2028 -1.1527 12 6 2.0421 -0.7303 -1.2392 13 1 3.1208 -0.5939 -1.3156 14 6 1.3804 -0.1552 -2.4649 15 1 0.6668 0.6495 -2.3661 16 6 1.6860 -0.6561 -3.7125 17 7 2.5547 -1.6363 -3.8329 18 14 0.8664 0.0573 -5.2320 19 1 -0.0644 1.1420 -4.8292 20 1 1.9033 0.6067 -6.1420 21 1 0.1081 -1.0102 -5.9326 22 1 -0.3634 0.5058 0.8945 23 1 -0.3633 0.5219 -0.8854 24 1 -0.3633 -1.0276 -0.0093 25 1 3.1193 -0.8969 1.1554 26 1 1.8366 -0.1389 2.1335 27 1 1.7896 -2.6762 2.1276 28 1 0.2789 -1.9078 1.5925 29 1 0.8947 -4.6920 0.9610 30 1 1.0059 -5.9436 -1.1803 31 1 1.5812 -4.7289 -3.2488 32 1 2.7700 -1.9884 -4.7107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = 51.721709 kcal Electronic energy + Delta-G solvation = -15079.629228 eV Core-core repulsion = 12812.693330 eV Total energy + Delta-G solvation = -2266.935898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63209 -36.36971 -33.39841 -31.16437 -30.01278 -28.98093 -26.33906 -24.58517 -22.79848 -21.55338 -20.89738 -17.79496 -16.38115 -15.48201 -15.15610 -14.70796 -14.29811 -13.61063 -13.31193 -12.95646 -12.48007 -12.09647 -11.90219 -11.69644 -11.44779 -11.30382 -10.79462 -10.65142 -10.43700 -10.16179 -10.07270 -9.66084 -9.15457 -9.05872 -8.47906 -8.29074 -7.55374 -7.30125 -5.59319 -3.70507 2.28839 2.44421 3.40539 3.48308 3.51558 4.59144 5.09664 5.35794 5.50494 5.62499 5.69136 5.70458 5.85467 5.96486 6.02013 6.09543 6.23384 6.32960 6.41450 6.42822 6.63953 6.69495 6.78401 6.93223 6.99484 7.10009 7.24225 7.32376 7.40432 7.70585 7.90209 8.22399 8.50397 9.12490 9.67497 9.83660 11.29818 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.014648 C = 0.010632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.367867 B = 1911.096375 C = 2632.821486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.065 4.065 6 C -0.165 4.165 7 C -0.101 4.101 8 C -0.212 4.212 9 C 0.069 3.931 10 N -0.356 5.356 11 C 0.174 3.826 12 C 0.093 3.907 13 H 0.040 0.960 14 C -0.539 4.539 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.800 5.800 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.288 1.288 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -2.561 7.456 8.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.102 4.102 6 C -0.167 4.167 7 C -0.127 4.127 8 C -0.232 4.232 9 C -0.092 4.092 10 N -0.063 5.063 11 C 0.039 3.961 12 C 0.075 3.925 13 H 0.057 0.943 14 C -0.577 4.577 15 H 0.077 0.923 16 C -0.134 4.134 17 N -0.433 5.433 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.215 1.215 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.576 -2.257 6.528 7.085 hybrid contribution -0.746 -0.569 -0.153 0.951 sum -2.323 -2.826 6.374 7.350 Atomic orbital electron populations 1.21811 0.96070 1.01262 1.00011 1.21100 0.95612 0.98686 0.94569 0.91865 1.21643 0.99769 0.95634 0.98381 1.20291 1.00405 0.95744 0.93805 1.20657 1.05267 0.94064 0.96748 1.21223 0.99994 0.94040 0.97431 1.21916 1.06455 0.99891 0.94972 1.23139 0.96159 0.93332 0.96588 1.69621 1.06100 1.03936 1.26645 1.22715 0.89683 0.97769 0.85954 1.17667 0.96964 0.85109 0.92783 0.94266 1.20812 1.27034 1.20047 0.89772 0.92323 1.24855 0.95794 0.94373 0.98392 1.70263 1.30633 1.21283 1.21084 0.86763 0.79383 0.78948 0.84108 1.20135 1.21424 1.21476 0.95263 0.91734 0.93198 0.92319 0.92849 0.92553 0.91529 0.87194 0.87336 0.85250 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.02 37.16 0.30 -2.31 16 2 C -0.08 -1.64 2.86 -90.61 -0.26 -1.89 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.12 -2.02 5.65 -26.68 -0.15 -2.17 16 5 C -0.06 -1.11 5.09 -28.06 -0.14 -1.25 16 6 C -0.16 -3.42 5.00 -104.56 -0.52 -3.94 16 7 C -0.10 -1.91 9.75 -39.17 -0.38 -2.29 16 8 C -0.21 -4.06 10.12 -39.52 -0.40 -4.46 16 9 C 0.07 1.53 11.19 -17.69 -0.20 1.34 16 10 N -0.36 -9.20 5.50 -9.51 -0.05 -9.25 16 11 C 0.17 4.26 5.75 -82.44 -0.47 3.79 16 12 C 0.09 2.32 2.11 -93.07 -0.20 2.12 16 13 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.54 -14.63 7.80 -34.44 -0.27 -14.90 16 15 H 0.06 1.58 6.13 -52.48 -0.32 1.26 16 16 C 0.07 2.05 4.89 -17.82 -0.09 1.96 16 17 N -0.80 -22.69 9.77 55.43 0.54 -22.14 16 18 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 1.35 6.18 -51.93 -0.32 1.03 16 24 H 0.05 1.01 5.57 -51.93 -0.29 0.72 16 25 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 1.08 6.83 -51.92 -0.35 0.73 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.13 2.62 8.06 -52.48 -0.42 2.20 16 32 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 250.35 15.07 3.77 3.77 Total: -1.00 -29.13 250.35 -7.77 -36.90 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.22 Total: -1.81 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -2.78 Total: -24.01 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.49 Total: -31.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.13 -7.77 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.620 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds