Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.80762 * 2 1 4 4 C 1.53328 * 109.63711 * 120.51893 * 2 1 3 5 5 C 1.52767 * 108.38430 * 49.83095 * 4 2 1 6 6 C 1.50584 * 110.50065 * 50.88823 * 5 4 2 7 7 C 1.39183 * 117.95649 * 162.68899 * 6 5 4 8 8 C 1.38409 * 118.86737 * 179.46401 * 7 6 5 9 9 C 1.38237 * 118.83850 * 359.97438 * 8 7 6 10 10 N 1.31513 * 120.61474 * 0.13597 * 9 8 7 11 11 C 1.32698 * 122.39839 * 359.97438 * 10 9 8 12 12 C 1.50726 * 117.56423 * 179.71606 * 11 10 9 13 13 H 1.08999 * 109.25505 * 282.44430 * 12 11 10 14 14 C 1.50699 * 109.22414 * 41.89870 * 12 11 10 15 15 H 1.08010 * 119.99917 * 121.08011 * 14 12 11 16 16 C 1.37873 * 120.00008 * 301.07545 * 14 12 11 17 17 N 1.31520 * 120.00170 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00017 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47169 * 119.99810 * 18 16 14 21 21 H 1.48504 * 109.46662 * 239.99793 * 18 16 14 22 22 H 1.08995 * 109.47375 * 299.48423 * 1 2 3 23 23 H 1.09005 * 109.46981 * 59.48301 * 1 2 3 24 24 H 1.09000 * 109.47091 * 179.47920 * 1 2 3 25 25 H 1.09002 * 109.68834 * 169.56572 * 4 2 1 26 26 H 1.09002 * 109.68826 * 290.09589 * 4 2 1 27 27 H 1.09002 * 109.26558 * 171.20062 * 5 4 2 28 28 H 1.09010 * 109.26122 * 290.64844 * 5 4 2 29 29 H 1.08009 * 120.56500 * 359.44060 * 7 6 5 30 30 H 1.07997 * 120.57692 * 179.97438 * 8 7 6 31 31 H 1.08004 * 119.69151 * 180.13337 * 9 8 7 32 32 H 0.96995 * 119.99829 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8993 1.0255 0.0000 4 6 2.0453 -0.7333 1.2440 5 6 1.3264 -2.0777 1.3431 6 6 1.4117 -2.8190 0.0352 7 6 1.1452 -4.1850 0.0408 8 6 1.2071 -4.8829 -1.1529 9 6 1.5311 -4.1984 -2.3094 10 7 1.7789 -2.9072 -2.2763 11 6 1.7322 -2.2028 -1.1527 12 6 2.0421 -0.7303 -1.2392 13 1 3.1208 -0.5939 -1.3156 14 6 1.3804 -0.1552 -2.4649 15 1 0.6668 0.6495 -2.3661 16 6 1.6860 -0.6561 -3.7125 17 7 2.5547 -1.6363 -3.8329 18 14 0.8664 0.0573 -5.2320 19 1 -0.0644 1.1420 -4.8292 20 1 1.9033 0.6067 -6.1420 21 1 0.1081 -1.0102 -5.9326 22 1 -0.3634 0.5058 0.8945 23 1 -0.3633 0.5219 -0.8854 24 1 -0.3633 -1.0276 -0.0093 25 1 3.1193 -0.8969 1.1554 26 1 1.8366 -0.1389 2.1335 27 1 1.7896 -2.6762 2.1276 28 1 0.2789 -1.9078 1.5925 29 1 0.8947 -4.6920 0.9610 30 1 1.0059 -5.9436 -1.1803 31 1 1.5812 -4.7289 -3.2488 32 1 2.7700 -1.9884 -4.7107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = 35.972244 kcal Electronic energy + Delta-G solvation = -15080.312176 eV Core-core repulsion = 12812.693330 eV Total energy + Delta-G solvation = -2267.618846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24954 -37.96151 -35.22151 -32.97667 -31.60334 -30.64040 -27.98162 -26.39894 -24.44349 -23.17183 -22.54583 -19.36757 -18.33032 -17.17068 -16.81288 -16.36578 -16.04238 -15.17380 -14.95774 -14.64967 -14.20747 -13.70160 -13.48963 -13.32139 -13.04786 -12.84851 -12.71204 -12.50478 -12.10088 -11.87946 -11.68125 -11.32604 -10.94974 -10.75392 -10.33906 -10.05514 -9.22040 -9.09087 -7.65993 -5.81902 0.65220 0.89460 1.41594 1.44186 1.52813 2.54890 3.35815 3.54459 3.90739 4.12015 4.19216 4.28281 4.39529 4.46470 4.51096 4.56738 4.81290 4.84237 4.98059 5.07236 5.15353 5.18680 5.32190 5.36780 5.42416 5.56054 5.60695 5.67767 5.76715 5.85905 5.99915 6.37691 6.52551 7.05199 7.71684 8.01299 9.20098 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.014648 C = 0.010632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.367867 B = 1911.096375 C = 2632.821486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.063 4.063 6 C -0.164 4.164 7 C -0.100 4.100 8 C -0.196 4.196 9 C 0.039 3.961 10 N -0.407 5.407 11 C 0.135 3.865 12 C 0.090 3.910 13 H -0.005 1.005 14 C -0.554 4.554 15 H 0.052 0.948 16 C 0.030 3.970 17 N -0.819 5.819 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.292 1.292 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 -3.514 9.900 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.166 4.166 7 C -0.126 4.126 8 C -0.216 4.216 9 C -0.121 4.121 10 N -0.114 5.114 11 C 0.000 4.000 12 C 0.072 3.928 13 H 0.012 0.988 14 C -0.592 4.592 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.452 5.452 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.218 1.218 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.756 -3.203 8.978 9.922 hybrid contribution -0.365 -0.324 -0.895 1.020 sum -3.121 -3.528 8.082 9.355 Atomic orbital electron populations 1.21685 0.95139 1.00748 1.00538 1.21059 0.96313 0.98360 0.94255 0.92160 1.21601 0.99118 0.96148 0.97928 1.20399 1.01713 0.95434 0.92512 1.21006 1.03288 0.95398 0.96936 1.21726 0.98574 0.93300 0.99013 1.22264 1.03800 1.01678 0.93876 1.23327 0.97695 0.92701 0.98413 1.69251 1.07659 1.05881 1.28613 1.22489 0.92667 0.97447 0.87430 1.17588 0.94168 0.86899 0.94195 0.98755 1.21102 1.26896 1.19963 0.91253 0.93033 1.25476 0.96580 0.94822 1.00733 1.70484 1.31659 1.22168 1.20919 0.85929 0.78559 0.78152 0.81341 1.19764 1.21057 1.21840 0.91591 0.94303 0.94044 0.93293 0.89157 0.89321 0.89771 0.82685 0.83373 0.84828 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.02 71.98 0.58 -4.06 16 2 C -0.08 -3.24 2.86 -10.79 -0.03 -3.27 16 3 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.11 -3.52 5.65 30.63 0.17 -3.34 16 5 C -0.06 -1.91 5.09 29.73 0.15 -1.76 16 6 C -0.16 -6.45 5.00 -19.82 -0.10 -6.55 16 7 C -0.10 -3.41 9.75 22.54 0.22 -3.19 16 8 C -0.20 -6.98 10.12 22.31 0.23 -6.75 16 9 C 0.04 1.75 11.19 84.74 0.95 2.70 16 10 N -0.41 -21.58 5.50 -184.01 -1.01 -22.59 16 11 C 0.14 6.69 5.75 42.28 0.24 6.94 16 12 C 0.09 4.64 2.11 -12.38 -0.03 4.61 16 13 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 14 C -0.55 -31.30 7.80 25.60 0.20 -31.10 16 15 H 0.05 2.89 6.13 -2.91 -0.02 2.87 16 16 C 0.03 1.73 4.89 84.65 0.41 2.14 16 17 N -0.82 -48.59 9.77 21.45 0.21 -48.38 16 18 Si 0.93 45.79 29.54 68.60 2.03 47.81 16 19 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.04 1.62 6.18 -2.38 -0.01 1.60 16 24 H 0.04 1.59 5.57 -2.39 -0.01 1.58 16 25 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 2.16 8.13 -2.39 -0.02 2.14 16 28 H 0.08 2.31 6.83 -2.38 -0.02 2.29 16 29 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.13 5.53 8.06 -2.91 -0.02 5.50 16 32 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -66.35 250.35 5.32 -61.03 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.10 Total: 5.76 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.00 Total: -43.63 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.80 Total: -70.97 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -66.35 5.32 -61.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.999 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds