Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38340 * 119.96055 * 2 1 4 4 C 1.38259 * 119.88978 * 179.97438 * 3 2 1 5 5 C 1.37955 * 120.25987 * 0.14900 * 4 3 2 6 6 C 1.39360 * 120.19888 * 0.03370 * 5 4 3 7 7 C 1.37880 * 119.96169 * 180.02562 * 2 1 3 8 8 C 1.51578 * 131.56693 * 359.55797 * 7 2 1 9 9 C 1.54594 * 102.83989 * 196.02667 * 8 7 2 10 10 H 1.09004 * 110.77958 * 216.01149 * 9 8 7 11 11 C 1.50701 * 110.77887 * 92.77533 * 9 8 7 12 12 H 1.08002 * 120.00201 * 359.97438 * 11 9 8 13 13 C 1.37879 * 120.00474 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00409 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99509 * 359.97438 * 13 11 9 16 16 H 1.48500 * 109.46965 * 90.00610 * 15 13 11 17 17 H 1.48503 * 109.46833 * 210.00141 * 15 13 11 18 18 H 1.48499 * 109.47212 * 330.00031 * 15 13 11 19 19 N 1.40030 * 129.96080 * 179.25565 * 6 5 4 20 20 C 1.46900 * 111.00013 * 283.69532 * 19 6 5 21 21 H 1.08994 * 109.47368 * 89.99802 * 1 2 3 22 22 H 1.09004 * 109.46825 * 209.99858 * 1 2 3 23 23 H 1.09000 * 109.47225 * 329.99878 * 1 2 3 24 24 H 1.08008 * 120.05844 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.87263 * 180.17358 * 4 3 2 26 26 H 1.08005 * 119.89897 * 179.75368 * 5 4 3 27 27 H 1.09003 * 110.73613 * 314.36495 * 8 7 2 28 28 H 1.08996 * 110.73896 * 77.50709 * 8 7 2 29 29 H 0.96991 * 120.00197 * 179.97438 * 14 13 11 30 30 H 1.09007 * 109.46761 * 300.04185 * 20 19 6 31 31 H 1.09004 * 109.47202 * 60.03700 * 20 19 6 32 32 H 1.08999 * 109.47483 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1985 0.0000 4 6 3.5805 1.1968 0.0005 5 6 4.2742 0.0044 -0.0020 6 6 3.5856 -1.2072 -0.0059 7 6 2.1956 -1.1945 -0.0005 8 6 1.7154 -2.6322 0.0076 9 6 2.9833 -3.4156 0.4179 10 1 3.0316 -4.3727 -0.1016 11 6 3.0275 -3.6174 1.9107 12 1 2.2333 -3.2298 2.5317 13 6 4.0821 -4.2957 2.4839 14 7 4.1208 -4.4713 3.7867 15 14 5.4560 -4.9654 1.4100 16 1 6.5183 -3.9377 1.2672 17 1 6.0270 -6.1834 2.0390 18 1 4.9149 -5.3076 0.0701 19 7 4.0742 -2.5193 -0.0229 20 6 4.5484 -2.8872 -1.3637 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6581 2.1341 -0.0004 25 1 4.1195 2.1326 0.0034 26 1 5.3542 0.0099 -0.0056 27 1 0.9219 -2.7699 0.7421 28 1 1.3773 -2.9318 -0.9844 29 1 4.8625 -4.9488 4.1899 30 1 3.7248 -2.8110 -2.0739 31 1 5.3501 -2.2123 -1.6635 32 1 4.9220 -3.9110 -1.3488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = 19.335231 kcal Electronic energy + Delta-G solvation = -14713.208894 eV Core-core repulsion = 12444.868612 eV Total energy + Delta-G solvation = -2268.340281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60509 -37.95460 -34.69098 -33.93579 -31.68290 -30.56882 -27.90465 -26.96713 -26.06854 -22.57132 -22.09146 -20.84693 -19.15135 -17.18968 -16.85727 -16.34373 -16.04604 -15.61352 -14.93204 -14.59150 -14.57521 -14.30164 -13.92588 -13.55995 -13.27075 -13.02295 -12.81628 -12.67446 -12.59716 -12.30018 -11.88763 -11.65915 -11.60812 -11.30206 -10.82712 -10.09688 -9.38841 -8.57876 -8.29050 -6.40013 0.55723 0.57676 1.36026 1.45567 1.50799 2.41028 2.80171 2.89916 3.36554 3.83461 4.06143 4.18030 4.25051 4.35953 4.41649 4.51231 4.51806 4.70642 4.78897 4.80603 4.84041 4.86921 4.99734 5.03744 5.16502 5.36363 5.55028 5.63900 5.69290 5.79449 6.00986 6.22108 6.32942 6.63023 6.69675 7.33405 8.84850 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034285 B = 0.011087 C = 0.010229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.498697 B = 2524.923545 C = 2736.645360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.149 4.149 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.087 4.087 9 C 0.173 3.827 10 H 0.059 0.941 11 C -0.505 4.505 12 H 0.029 0.971 13 C 0.027 3.973 14 N -0.946 5.946 15 Si 0.968 3.032 16 H -0.276 1.276 17 H -0.303 1.303 18 H -0.241 1.241 19 N -0.521 5.521 20 C 0.022 3.978 21 H 0.083 0.917 22 H 0.053 0.947 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.265 0.735 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 9.039 -12.360 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.164 4.164 4 C -0.120 4.120 5 C -0.169 4.169 6 C -0.003 4.003 7 C -0.157 4.157 8 C -0.125 4.125 9 C 0.069 3.931 10 H 0.077 0.923 11 C -0.543 4.543 12 H 0.047 0.953 13 C -0.172 4.172 14 N -0.586 5.586 15 Si 0.794 3.206 16 H -0.202 1.202 17 H -0.231 1.231 18 H -0.165 1.165 19 N -0.240 5.240 20 C -0.124 4.124 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.169 0.831 25 H 0.171 0.829 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.138 8.838 -11.921 14.993 hybrid contribution 0.223 -0.579 -0.043 0.622 sum -1.916 8.259 -11.964 14.663 Atomic orbital electron populations 1.20763 0.89743 1.02917 1.02953 1.19627 0.97260 0.91480 0.99034 1.21198 0.94274 0.97458 1.03517 1.21158 0.94587 0.97387 0.98878 1.20702 0.99989 0.90678 1.05525 1.19895 0.92801 0.90606 0.96967 1.21109 0.94770 0.95422 1.04368 1.21497 0.98985 0.91251 1.00779 1.20633 0.85837 0.92029 0.94647 0.92343 1.21021 1.07245 1.34795 0.91236 0.95266 1.25844 1.00263 0.95181 0.95886 1.70071 1.33089 1.43253 1.12209 0.85472 0.79213 0.76287 0.79631 1.20156 1.23064 1.16466 1.60492 1.38470 1.01038 1.23964 1.22525 1.00103 1.01870 0.87860 0.89827 0.92814 0.89912 0.83050 0.82942 0.86178 0.91414 0.89937 0.92587 0.94365 0.90539 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.90 71.24 0.70 -2.03 16 2 C -0.07 -2.41 5.87 -19.93 -0.12 -2.52 16 3 C -0.15 -4.13 9.71 22.30 0.22 -3.91 16 4 C -0.10 -2.97 10.02 22.21 0.22 -2.74 16 5 C -0.15 -5.35 10.07 22.47 0.23 -5.13 16 6 C 0.09 3.93 5.53 38.29 0.21 4.14 16 7 C -0.15 -6.12 6.04 -19.49 -0.12 -6.24 16 8 C -0.09 -3.56 6.02 30.67 0.18 -3.38 16 9 C 0.17 8.24 1.87 44.52 0.08 8.32 16 10 H 0.06 2.69 6.65 -2.38 -0.02 2.68 16 11 C -0.50 -29.72 9.27 25.60 0.24 -29.48 16 12 H 0.03 1.92 7.86 -2.91 -0.02 1.90 16 13 C 0.03 1.63 5.47 84.66 0.46 2.09 16 14 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 15 Si 0.97 47.41 25.61 68.60 1.76 49.17 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 18 H -0.24 -10.52 5.26 99.48 0.52 -10.00 16 19 N -0.52 -23.22 3.50 -693.81 -2.43 -25.64 16 20 C 0.02 0.78 8.90 127.69 1.14 1.91 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 1.50 7.47 -2.38 -0.02 1.48 16 23 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 24 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 25 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 27 H 0.07 2.89 7.46 -2.39 -0.02 2.87 16 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.07 2.37 6.17 -2.39 -0.01 2.36 16 Total: -1.00 -69.95 259.97 3.99 -65.96 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.91 Total: 10.01 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 3.45 Total: -38.97 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.13 Total: -86.16 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.76 Total: 49.17 kcal Total: -69.95 3.99 -65.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.290 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds