Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38305 * 119.86397 * 2 1 4 4 C 1.38312 * 119.88307 * 179.85188 * 3 2 1 5 5 C 1.37918 * 120.07788 * 359.97438 * 4 3 2 6 6 C 1.38966 * 120.48210 * 0.28486 * 5 4 3 7 7 C 1.37907 * 119.87080 * 179.97438 * 2 1 3 8 8 C 1.50695 * 119.90077 * 0.02562 * 7 2 1 9 9 N 1.40513 * 111.01605 * 179.20296 * 6 5 4 10 10 C 1.47902 * 107.62452 * 18.42602 * 9 6 5 11 11 H 1.09005 * 110.78279 * 214.30668 * 10 9 6 12 12 C 1.50698 * 110.78197 * 91.06023 * 10 9 6 13 13 H 1.08005 * 119.99819 * 243.99885 * 12 10 9 14 14 C 1.37875 * 120.00046 * 63.99226 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.51572 * 131.56532 * 180.30310 * 5 4 3 21 21 H 1.08997 * 109.47389 * 270.01980 * 1 2 3 22 22 H 1.09007 * 109.47768 * 30.01826 * 1 2 3 23 23 H 1.09007 * 109.47350 * 150.01803 * 1 2 3 24 24 H 1.07996 * 120.06409 * 359.83225 * 3 2 1 25 25 H 1.07997 * 119.95976 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.47890 * 270.02992 * 8 7 2 27 27 H 1.09003 * 109.47153 * 30.02380 * 8 7 2 28 28 H 1.09005 * 109.47566 * 150.02299 * 8 7 2 29 29 H 1.00899 * 111.08118 * 256.72771 * 9 6 5 30 30 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 31 31 H 1.09001 * 110.73884 * 45.70191 * 20 5 4 32 32 H 1.09000 * 110.89800 * 282.44334 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1994 0.0000 4 6 3.5788 1.1999 0.0031 5 6 4.2704 0.0066 0.0067 6 6 3.5878 -1.2038 0.0013 7 6 2.1938 -1.1959 0.0005 8 6 1.4351 -2.4979 0.0005 9 7 4.4827 -2.2870 -0.0119 10 6 5.8014 -1.7838 0.4302 11 1 6.6073 -2.3043 -0.0873 12 6 5.9523 -1.9195 1.9234 13 1 6.0545 -1.0374 2.5382 14 6 5.9599 -3.1697 2.5047 15 7 5.8358 -4.2438 1.7561 16 14 6.1463 -3.3379 4.3558 17 1 6.1245 -4.7756 4.7269 18 1 5.0267 -2.6346 5.0320 19 1 7.4364 -2.7372 4.7800 20 6 5.7558 -0.2947 0.0166 21 1 -0.3634 0.0004 1.0276 22 1 -0.3635 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6545 2.1340 -0.0027 25 1 4.1178 2.1357 0.0035 26 1 1.2513 -2.8115 1.0282 27 1 0.4836 -2.3640 -0.5141 28 1 2.0215 -3.2602 -0.5126 29 1 4.5421 -2.6975 -0.9317 30 1 5.7387 -4.1564 0.7949 31 1 6.2706 0.3256 0.7503 32 1 6.1872 -0.1561 -0.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = 19.514037 kcal Electronic energy + Delta-G solvation = -14516.470152 eV Core-core repulsion = 12248.137625 eV Total energy + Delta-G solvation = -2268.332527 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80122 -36.43511 -32.86439 -32.37977 -30.00746 -28.66683 -26.53552 -25.48109 -23.97492 -21.17579 -20.08148 -19.47397 -16.88484 -16.18330 -14.99233 -14.56212 -14.17265 -13.71363 -13.53409 -13.20516 -12.62277 -12.58022 -12.35733 -11.91184 -11.61670 -11.51108 -11.46437 -10.84269 -10.70286 -10.68340 -10.16758 -10.10899 -9.95103 -9.00594 -8.51504 -8.34743 -7.85799 -6.86290 -6.26641 -4.04430 1.96064 2.05254 3.46242 3.49713 3.67011 4.29493 4.57144 4.79182 5.30116 5.38622 5.46270 5.53041 5.57510 5.72530 5.81339 5.95162 6.01528 6.16354 6.18132 6.21470 6.25731 6.35040 6.48623 6.72197 6.85686 6.90802 7.07272 7.12482 7.32276 7.48819 8.00857 8.12730 8.49142 8.49659 8.94642 9.74939 11.11983 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.009804 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.591413 B = 2855.386165 C = 3102.723414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.141 4.141 6 C 0.137 3.863 7 C -0.102 4.102 8 C -0.101 4.101 9 N -0.619 5.619 10 C 0.199 3.801 11 H 0.039 0.961 12 C -0.591 4.591 13 H 0.049 0.951 14 C 0.036 3.964 15 N -0.892 5.892 16 Si 1.065 2.935 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.289 1.289 20 C -0.100 4.100 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.323 0.677 30 H 0.276 0.724 31 H 0.075 0.925 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 6.956 -4.717 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.082 4.082 3 C -0.173 4.173 4 C -0.116 4.116 5 C -0.144 4.144 6 C 0.037 3.963 7 C -0.105 4.105 8 C -0.157 4.157 9 N -0.247 5.247 10 C 0.095 3.905 11 H 0.057 0.943 12 C -0.630 4.630 13 H 0.067 0.933 14 C -0.172 4.172 15 N -0.526 5.526 16 Si 0.893 3.107 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.139 4.139 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.145 5.447 -2.911 9.445 hybrid contribution 0.196 1.762 -1.784 2.515 sum -6.950 7.209 -4.695 11.060 Atomic orbital electron populations 1.20770 0.91912 1.02048 1.01852 1.19348 0.95195 0.92344 1.01317 1.20620 0.93634 0.96738 1.06299 1.20249 0.93694 0.96405 1.01222 1.21122 0.96499 0.93806 1.03004 1.19646 0.91811 0.90517 0.94280 1.19116 0.91302 0.94869 1.05217 1.20619 0.98508 0.94569 1.02014 1.59297 1.10399 1.27911 1.27085 1.20297 0.85236 0.87504 0.97501 0.94274 1.21731 1.55808 0.94970 0.90459 0.93318 1.25682 0.92909 0.92194 1.06402 1.70676 1.43173 1.30612 1.08114 0.83621 0.76371 0.75986 0.74686 1.20785 1.21564 1.21520 1.21764 0.91394 1.01025 0.99676 0.91663 0.92262 0.91501 0.86942 0.87333 0.91677 0.92523 0.91804 0.85142 0.91236 0.90667 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.59 36.00 0.35 -1.09 16 2 C -0.08 -1.41 5.87 -104.72 -0.61 -2.02 16 3 C -0.15 -2.61 9.71 -39.53 -0.38 -2.99 16 4 C -0.10 -1.80 10.03 -39.67 -0.40 -2.20 16 5 C -0.14 -3.02 6.22 -104.04 -0.65 -3.66 16 6 C 0.14 3.05 6.44 -83.17 -0.54 2.51 16 7 C -0.10 -2.01 5.90 -104.31 -0.62 -2.63 16 8 C -0.10 -1.75 9.55 36.00 0.34 -1.40 16 9 N -0.62 -14.64 5.68 -51.18 -0.29 -14.93 16 10 C 0.20 4.98 2.81 -67.47 -0.19 4.79 16 11 H 0.04 1.00 8.01 -51.93 -0.42 0.59 16 12 C -0.59 -16.78 8.72 -34.44 -0.30 -17.08 16 13 H 0.05 1.40 7.60 -52.48 -0.40 1.01 16 14 C 0.04 1.05 5.42 -17.82 -0.10 0.95 16 15 N -0.89 -26.71 13.57 55.43 0.75 -25.96 16 16 Si 1.06 25.69 29.90 -169.99 -5.08 20.60 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.10 -2.17 6.56 -26.61 -0.17 -2.34 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 23 H 0.07 0.81 5.92 -51.93 -0.31 0.50 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.80 5.92 -51.93 -0.31 0.49 16 28 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 29 H 0.32 6.89 8.86 -39.29 -0.35 6.54 16 30 H 0.28 8.14 6.61 -40.82 -0.27 7.87 16 31 H 0.07 1.64 7.77 -51.93 -0.40 1.23 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 264.57 15.07 3.99 3.99 Total: -1.00 -30.98 264.57 -8.09 -39.07 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.19 Total: 4.39 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -3.27 Total: -27.16 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.46 Total: -40.89 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.98 -8.09 -39.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.587 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds