Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38305 * 119.86397 * 2 1 4 4 C 1.38312 * 119.88307 * 179.85188 * 3 2 1 5 5 C 1.37918 * 120.07788 * 359.97438 * 4 3 2 6 6 C 1.38966 * 120.48210 * 0.28486 * 5 4 3 7 7 C 1.37907 * 119.87080 * 179.97438 * 2 1 3 8 8 C 1.50695 * 119.90077 * 0.02562 * 7 2 1 9 9 N 1.40513 * 111.01605 * 179.20296 * 6 5 4 10 10 C 1.47902 * 107.62452 * 18.42602 * 9 6 5 11 11 H 1.09005 * 110.78279 * 214.30668 * 10 9 6 12 12 C 1.50698 * 110.78197 * 91.06023 * 10 9 6 13 13 H 1.08005 * 119.99819 * 243.99885 * 12 10 9 14 14 C 1.37875 * 120.00046 * 63.99226 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.51572 * 131.56532 * 180.30310 * 5 4 3 21 21 H 1.08997 * 109.47389 * 270.01980 * 1 2 3 22 22 H 1.09007 * 109.47768 * 30.01826 * 1 2 3 23 23 H 1.09007 * 109.47350 * 150.01803 * 1 2 3 24 24 H 1.07996 * 120.06409 * 359.83225 * 3 2 1 25 25 H 1.07997 * 119.95976 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.47890 * 270.02992 * 8 7 2 27 27 H 1.09003 * 109.47153 * 30.02380 * 8 7 2 28 28 H 1.09005 * 109.47566 * 150.02299 * 8 7 2 29 29 H 1.00899 * 111.08118 * 256.72771 * 9 6 5 30 30 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 31 31 H 1.09001 * 110.73884 * 45.70191 * 20 5 4 32 32 H 1.09000 * 110.89800 * 282.44334 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1994 0.0000 4 6 3.5788 1.1999 0.0031 5 6 4.2704 0.0066 0.0067 6 6 3.5878 -1.2038 0.0013 7 6 2.1938 -1.1959 0.0005 8 6 1.4351 -2.4979 0.0005 9 7 4.4827 -2.2870 -0.0119 10 6 5.8014 -1.7838 0.4302 11 1 6.6073 -2.3043 -0.0873 12 6 5.9523 -1.9195 1.9234 13 1 6.0545 -1.0374 2.5382 14 6 5.9599 -3.1697 2.5047 15 7 5.8358 -4.2438 1.7561 16 14 6.1463 -3.3379 4.3558 17 1 6.1245 -4.7756 4.7269 18 1 5.0267 -2.6346 5.0320 19 1 7.4364 -2.7372 4.7800 20 6 5.7558 -0.2947 0.0166 21 1 -0.3634 0.0004 1.0276 22 1 -0.3635 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6545 2.1340 -0.0027 25 1 4.1178 2.1357 0.0035 26 1 1.2513 -2.8115 1.0282 27 1 0.4836 -2.3640 -0.5141 28 1 2.0215 -3.2602 -0.5126 29 1 4.5421 -2.6975 -0.9317 30 1 5.7387 -4.1564 0.7949 31 1 6.2706 0.3256 0.7503 32 1 6.1872 -0.1561 -0.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = 1.099465 kcal Electronic energy + Delta-G solvation = -14517.268668 eV Core-core repulsion = 12248.137625 eV Total energy + Delta-G solvation = -2269.131043 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36751 -38.02926 -34.64598 -34.09752 -31.48243 -30.32928 -28.10406 -27.05184 -25.76828 -22.85384 -21.76775 -20.96047 -18.95046 -17.83760 -16.49127 -16.06531 -15.68932 -15.64992 -15.12372 -14.80474 -14.16667 -14.08922 -13.61117 -13.42597 -13.30929 -13.27521 -12.65577 -12.62919 -12.26638 -12.19214 -11.99726 -11.83540 -11.59778 -10.91923 -10.54648 -10.24422 -9.29102 -8.68178 -8.37720 -6.30564 0.50269 0.57081 1.50639 1.58622 1.77620 2.57348 2.83078 3.04612 3.46599 3.85105 4.00596 4.10990 4.24549 4.40449 4.42142 4.44931 4.61395 4.74249 4.79019 4.82041 4.92712 5.04641 5.10140 5.10303 5.21125 5.44656 5.59552 5.66830 5.80203 5.94592 6.03816 6.20729 6.45395 6.67873 6.76889 7.56366 8.86884 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.009804 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.591413 B = 2855.386165 C = 3102.723414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.080 4.080 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.168 4.168 6 C 0.098 3.902 7 C -0.120 4.120 8 C -0.096 4.096 9 N -0.632 5.632 10 C 0.192 3.808 11 H 0.022 0.978 12 C -0.605 4.605 13 H 0.036 0.964 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 1.108 2.892 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.091 4.091 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.153 0.847 25 H 0.132 0.868 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.328 0.672 30 H 0.268 0.732 31 H 0.067 0.933 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 8.762 -4.557 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.081 4.081 3 C -0.164 4.164 4 C -0.120 4.120 5 C -0.171 4.171 6 C -0.001 4.001 7 C -0.122 4.122 8 C -0.152 4.152 9 N -0.260 5.260 10 C 0.087 3.913 11 H 0.040 0.960 12 C -0.644 4.644 13 H 0.054 0.946 14 C -0.214 4.214 15 N -0.551 5.551 16 Si 0.931 3.069 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.130 4.130 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.170 0.830 25 H 0.150 0.850 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.149 7.278 -2.765 12.013 hybrid contribution 0.743 1.298 -1.913 2.428 sum -8.405 8.576 -4.678 12.887 Atomic orbital electron populations 1.20855 0.88540 1.03957 1.02992 1.19892 0.97620 0.91432 0.99118 1.21129 0.93091 0.98332 1.03881 1.20610 0.94793 0.96249 1.00369 1.21240 0.95905 0.94869 1.05059 1.19929 0.92985 0.90221 0.96953 1.19511 0.90555 0.96843 1.05312 1.20608 0.99756 0.93320 1.01546 1.59039 1.09912 1.29221 1.27822 1.20143 0.85602 0.89774 0.95811 0.96014 1.22022 1.55553 0.94538 0.92265 0.94567 1.26996 0.92253 0.92102 1.10059 1.70770 1.45300 1.31176 1.07897 0.83053 0.77401 0.76133 0.70282 1.20658 1.20878 1.19368 1.21591 0.92578 0.98479 1.00332 0.90692 0.89584 0.90471 0.82985 0.84981 0.92810 0.88919 0.93328 0.84705 0.92170 0.91406 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 9.59 71.23 0.68 -1.63 16 2 C -0.08 -2.50 5.87 -19.93 -0.12 -2.62 16 3 C -0.15 -4.38 9.71 22.30 0.22 -4.16 16 4 C -0.10 -3.54 10.03 22.21 0.22 -3.31 16 5 C -0.17 -7.11 6.22 -19.49 -0.12 -7.23 16 6 C 0.10 4.38 6.44 38.20 0.25 4.62 16 7 C -0.12 -4.57 5.90 -19.66 -0.12 -4.69 16 8 C -0.10 -3.24 9.55 71.23 0.68 -2.56 16 9 N -0.63 -30.98 5.68 -315.85 -1.79 -32.77 16 10 C 0.19 9.99 2.81 44.52 0.13 10.11 16 11 H 0.02 1.18 8.01 -2.38 -0.02 1.16 16 12 C -0.61 -35.33 8.72 25.60 0.22 -35.10 16 13 H 0.04 2.14 7.60 -2.91 -0.02 2.12 16 14 C -0.01 -0.68 5.42 84.65 0.46 -0.22 16 15 N -0.92 -56.40 13.57 21.45 0.29 -56.11 16 16 Si 1.11 52.19 29.90 68.60 2.05 54.24 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 C -0.09 -4.03 6.56 30.67 0.20 -3.83 16 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.09 1.43 8.08 -2.38 -0.02 1.41 16 23 H 0.08 1.51 5.92 -2.38 -0.01 1.50 16 24 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 25 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 2.37 5.92 -2.39 -0.01 2.36 16 28 H 0.05 1.75 7.96 -2.38 -0.02 1.73 16 29 H 0.33 14.74 8.86 -89.69 -0.79 13.95 16 30 H 0.27 16.44 6.61 -92.71 -0.61 15.83 16 31 H 0.07 3.00 7.77 -2.39 -0.02 2.99 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -68.05 264.57 3.73 -64.32 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.48 Total: 20.92 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 2.70 Total: -50.61 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.50 Total: -88.88 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.05 Total: 54.24 kcal Total: -68.05 3.73 -64.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.416 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds