Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47241 * 2 1 4 4 C 1.50702 * 109.47507 * 239.99910 * 2 1 3 5 5 H 1.07994 * 119.99825 * 244.66009 * 4 2 1 6 6 C 1.37878 * 119.99900 * 64.65955 * 4 2 1 7 7 N 1.31513 * 120.00065 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46762 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47092 * 119.99938 * 8 6 4 11 11 H 1.48497 * 109.47171 * 240.00092 * 8 6 4 12 12 C 1.53004 * 109.46979 * 119.99815 * 2 1 3 13 13 H 1.08999 * 110.37651 * 63.47435 * 12 2 1 14 14 C 1.53744 * 110.42033 * 300.96856 * 12 2 1 15 15 N 1.46541 * 105.18672 * 241.23195 * 14 12 2 16 16 C 1.39573 * 110.08224 * 0.02562 * 15 14 12 17 17 C 1.39680 * 129.31687 * 179.97438 * 16 15 14 18 18 C 1.37832 * 120.28146 * 180.27783 * 17 16 15 19 19 C 1.38307 * 120.22659 * 359.48186 * 18 17 16 20 20 C 1.38229 * 119.83226 * 0.51416 * 19 18 17 21 21 C 1.38172 * 120.15598 * 359.76048 * 20 19 18 22 22 H 1.08993 * 109.47273 * 300.00571 * 1 2 3 23 23 H 1.09008 * 109.46872 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99907 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.30478 * 0.16535 * 14 12 2 27 27 H 1.09002 * 110.30150 * 122.20898 * 14 12 2 28 28 H 0.96995 * 124.95635 * 180.02562 * 15 14 12 29 29 H 1.07999 * 119.85939 * 0.02562 * 17 16 15 30 30 H 1.07994 * 119.88434 * 179.72427 * 18 17 16 31 31 H 1.08004 * 120.08085 * 180.23158 * 19 18 17 32 32 H 1.08001 * 119.91867 * 179.72697 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5898 -1.6303 -1.1331 6 6 1.7804 -0.1860 -2.4804 7 7 1.1021 0.9344 -2.5990 8 14 2.4026 -1.0670 -4.0056 9 1 3.1316 -2.2968 -3.6040 10 1 1.2517 -1.4340 -4.8693 11 1 3.3185 -0.1707 -4.7559 12 6 2.0400 -0.7212 1.2493 13 1 1.7362 -1.7679 1.2338 14 6 1.5197 -0.0277 2.5190 15 7 2.7198 0.4184 3.2319 16 6 3.8633 0.0604 2.5161 17 6 5.2070 0.2854 2.8243 18 6 6.1981 -0.1492 1.9707 19 6 5.8697 -0.8212 0.8073 20 6 4.5422 -1.0477 0.4953 21 6 3.5449 -0.6090 1.3450 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9251 1.3035 -3.4784 26 1 0.8970 0.8271 2.2550 27 1 0.9550 -0.7318 3.1301 28 1 2.7195 0.8932 4.0777 29 1 5.4703 0.8058 3.7333 30 1 7.2347 0.0321 2.2131 31 1 6.6483 -1.1640 0.1420 32 1 4.2841 -1.5684 -0.4150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = 24.566723 kcal Electronic energy + Delta-G solvation = -14555.205459 eV Core-core repulsion = 12287.092032 eV Total energy + Delta-G solvation = -2268.113427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.77312 -35.95860 -34.17719 -31.58201 -29.81245 -28.63144 -26.91388 -25.11387 -22.54490 -21.62004 -20.68614 -18.96158 -16.82986 -16.30630 -15.17310 -14.98193 -14.69452 -14.01433 -13.26307 -12.94268 -12.76923 -12.40862 -11.90641 -11.82494 -11.23050 -11.17422 -10.97409 -10.86373 -10.53403 -10.46944 -10.15220 -9.70190 -9.45867 -9.25925 -8.72117 -8.31299 -7.97559 -6.69958 -5.95264 -3.98644 2.15097 2.26983 3.32305 3.40718 3.43285 3.97615 4.46861 4.56239 5.37409 5.38331 5.51742 5.66260 5.73728 5.83609 6.08490 6.14308 6.22651 6.31896 6.66108 6.69875 6.77956 6.92044 6.99207 7.18305 7.20748 7.32194 7.34885 7.44755 7.76840 7.87379 8.01817 8.10878 8.37861 8.48272 9.03599 9.64615 11.12795 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.011276 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.149200 B = 2482.463331 C = 3239.501273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 H 0.030 0.970 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.048 4.048 13 H 0.074 0.926 14 C 0.118 3.882 15 N -0.751 5.751 16 C 0.182 3.818 17 C -0.196 4.196 18 C -0.091 4.091 19 C -0.183 4.183 20 C -0.046 4.046 21 C -0.125 4.125 22 H 0.010 0.990 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.258 0.742 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.402 0.598 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -1.892 8.934 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 H 0.048 0.952 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.066 4.066 13 H 0.092 0.908 14 C -0.006 4.006 15 N -0.383 5.383 16 C 0.080 3.920 17 C -0.219 4.219 18 C -0.109 4.109 19 C -0.203 4.203 20 C -0.064 4.064 21 C -0.129 4.129 22 H 0.029 0.971 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.238 0.762 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.924 -1.782 8.789 9.789 hybrid contribution 0.285 -0.080 -0.558 0.632 sum 4.208 -1.862 8.231 9.430 Atomic orbital electron populations 1.21854 0.98936 0.98904 0.99775 1.18680 0.91875 0.95833 0.89745 0.95169 1.21175 1.34038 1.08513 0.90405 0.92318 1.24936 0.95273 0.94926 0.98845 1.69925 1.40320 1.19622 1.23198 0.86643 0.78610 0.79843 0.83580 1.19698 1.21211 1.21131 1.20879 0.90372 0.99933 0.95431 0.90761 1.22035 0.87210 0.98372 0.92994 1.44726 1.03779 1.64968 1.24872 1.18450 0.87739 0.94037 0.91817 1.20121 0.90253 1.09382 1.02105 1.20566 0.97684 0.98112 0.94581 1.20805 0.96022 1.05004 0.98512 1.20680 0.91029 0.96921 0.97798 1.19941 0.95747 1.02648 0.94563 0.97098 0.90658 0.95393 0.93221 0.91459 0.93036 0.76235 0.87689 0.87116 0.86991 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.75 37.16 0.33 -2.85 16 2 C 0.06 1.40 1.67 -91.77 -0.15 1.25 16 3 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.50 -13.35 7.30 -34.44 -0.25 -13.60 16 5 H 0.06 1.53 5.95 -52.49 -0.31 1.22 16 6 C 0.06 1.67 5.32 -17.82 -0.09 1.58 16 7 N -0.89 -25.54 11.67 55.43 0.65 -24.89 16 8 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C -0.05 -0.99 2.56 -91.13 -0.23 -1.22 16 13 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 14 C 0.12 2.07 7.08 -3.63 -0.03 2.05 16 15 N -0.75 -12.47 6.53 -58.11 -0.38 -12.85 16 16 C 0.18 3.42 7.03 -83.66 -0.59 2.84 16 17 C -0.20 -3.30 10.07 -39.19 -0.39 -3.70 16 18 C -0.09 -1.48 10.02 -39.70 -0.40 -1.88 16 19 C -0.18 -3.25 10.06 -39.56 -0.40 -3.65 16 20 C -0.05 -0.93 9.23 -39.61 -0.37 -1.30 16 21 C -0.12 -2.60 5.47 -104.26 -0.57 -3.17 16 22 H 0.01 0.21 6.44 -51.93 -0.33 -0.13 16 23 H 0.07 1.95 6.45 -51.92 -0.33 1.62 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.21 6.32 -51.93 -0.33 0.88 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.40 5.38 8.96 -40.82 -0.37 5.01 16 29 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.13 2.73 6.03 -52.49 -0.32 2.42 16 LS Contribution 258.83 15.07 3.90 3.90 Total: -1.00 -28.83 258.83 -8.09 -36.92 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.09 Total: 4.42 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.15 Total: -23.66 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.27 Total: -37.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.83 -8.09 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.488 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds