Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47241 * 2 1 4 4 C 1.50702 * 109.47507 * 239.99910 * 2 1 3 5 5 H 1.07994 * 119.99825 * 244.66009 * 4 2 1 6 6 C 1.37878 * 119.99900 * 64.65955 * 4 2 1 7 7 N 1.31513 * 120.00065 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46762 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47092 * 119.99938 * 8 6 4 11 11 H 1.48497 * 109.47171 * 240.00092 * 8 6 4 12 12 C 1.53004 * 109.46979 * 119.99815 * 2 1 3 13 13 H 1.08999 * 110.37651 * 63.47435 * 12 2 1 14 14 C 1.53744 * 110.42033 * 300.96856 * 12 2 1 15 15 N 1.46541 * 105.18672 * 241.23195 * 14 12 2 16 16 C 1.39573 * 110.08224 * 0.02562 * 15 14 12 17 17 C 1.39680 * 129.31687 * 179.97438 * 16 15 14 18 18 C 1.37832 * 120.28146 * 180.27783 * 17 16 15 19 19 C 1.38307 * 120.22659 * 359.48186 * 18 17 16 20 20 C 1.38229 * 119.83226 * 0.51416 * 19 18 17 21 21 C 1.38172 * 120.15598 * 359.76048 * 20 19 18 22 22 H 1.08993 * 109.47273 * 300.00571 * 1 2 3 23 23 H 1.09008 * 109.46872 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99907 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.30478 * 0.16535 * 14 12 2 27 27 H 1.09002 * 110.30150 * 122.20898 * 14 12 2 28 28 H 0.96995 * 124.95635 * 180.02562 * 15 14 12 29 29 H 1.07999 * 119.85939 * 0.02562 * 17 16 15 30 30 H 1.07994 * 119.88434 * 179.72427 * 18 17 16 31 31 H 1.08004 * 120.08085 * 180.23158 * 19 18 17 32 32 H 1.08001 * 119.91867 * 179.72697 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5898 -1.6303 -1.1331 6 6 1.7804 -0.1860 -2.4804 7 7 1.1021 0.9344 -2.5990 8 14 2.4026 -1.0670 -4.0056 9 1 3.1316 -2.2968 -3.6040 10 1 1.2517 -1.4340 -4.8693 11 1 3.3185 -0.1707 -4.7559 12 6 2.0400 -0.7212 1.2493 13 1 1.7362 -1.7679 1.2338 14 6 1.5197 -0.0277 2.5190 15 7 2.7198 0.4184 3.2319 16 6 3.8633 0.0604 2.5161 17 6 5.2070 0.2854 2.8243 18 6 6.1981 -0.1492 1.9707 19 6 5.8697 -0.8212 0.8073 20 6 4.5422 -1.0477 0.4953 21 6 3.5449 -0.6090 1.3450 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9251 1.3035 -3.4784 26 1 0.8970 0.8271 2.2550 27 1 0.9550 -0.7318 3.1301 28 1 2.7195 0.8932 4.0777 29 1 5.4703 0.8058 3.7333 30 1 7.2347 0.0321 2.2131 31 1 6.6483 -1.1640 0.1420 32 1 4.2841 -1.5684 -0.4150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = 7.773715 kcal Electronic energy + Delta-G solvation = -14555.933658 eV Core-core repulsion = 12287.092032 eV Total energy + Delta-G solvation = -2268.841626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21618 -37.44824 -35.93998 -33.43611 -31.39575 -30.01729 -28.52706 -27.11822 -24.07935 -23.21202 -22.10804 -20.69085 -18.41349 -18.14983 -16.79031 -16.41589 -16.30848 -15.67199 -14.74703 -14.54902 -14.33531 -14.21352 -13.45974 -13.36549 -12.99634 -12.79069 -12.74595 -12.60792 -12.26547 -12.17565 -11.98564 -11.46685 -11.04428 -10.84026 -10.69571 -10.40921 -9.43005 -8.09860 -8.02699 -6.13681 0.74050 0.86648 1.40030 1.42714 1.52776 2.46049 2.67306 3.13786 3.25787 3.97466 4.04760 4.35552 4.37687 4.40581 4.69348 4.72970 4.82423 4.89798 4.92623 4.99079 5.18004 5.27386 5.39531 5.41158 5.64241 5.68398 5.81356 5.94627 5.96551 6.04691 6.14480 6.43592 6.48289 6.96010 7.18242 7.52312 9.02398 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.011276 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.149200 B = 2482.463331 C = 3239.501273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.060 3.940 3 H -0.013 1.013 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.943 3.057 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.286 1.286 12 C -0.047 4.047 13 H 0.070 0.930 14 C 0.124 3.876 15 N -0.742 5.742 16 C 0.172 3.828 17 C -0.194 4.194 18 C -0.083 4.083 19 C -0.191 4.191 20 C -0.071 4.071 21 C -0.163 4.163 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.257 0.743 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.419 0.581 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -2.185 10.497 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.770 3.230 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.212 1.212 12 C -0.066 4.066 13 H 0.088 0.912 14 C -0.001 4.001 15 N -0.376 5.376 16 C 0.069 3.931 17 C -0.217 4.217 18 C -0.102 4.102 19 C -0.211 4.211 20 C -0.090 4.090 21 C -0.168 4.168 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.258 0.742 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.150 0.850 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.193 -2.078 10.380 11.791 hybrid contribution -0.050 0.025 -1.001 1.003 sum 5.142 -2.053 9.378 10.891 Atomic orbital electron populations 1.21700 0.98106 0.99180 0.99584 1.18552 0.92504 0.93556 0.91220 0.99443 1.21505 1.33244 1.08369 0.91440 0.92438 1.25666 0.95744 0.95677 1.01688 1.70058 1.41728 1.21025 1.23594 0.85717 0.78075 0.79002 0.80218 1.18773 1.20889 1.21216 1.20733 0.91194 0.99407 0.95252 0.91201 1.21922 0.87570 0.98479 0.92094 1.44627 1.02752 1.64937 1.25268 1.18673 0.89141 0.93883 0.91434 1.20547 0.89355 1.08626 1.03173 1.21024 0.99609 0.96210 0.93324 1.21087 0.95260 1.05042 0.99665 1.20711 0.92630 0.98121 0.97526 1.20088 0.95576 1.04857 0.96281 0.94313 0.93792 0.94715 0.93413 0.91966 0.90218 0.74177 0.84524 0.83244 0.84984 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.75 71.98 0.63 -5.39 16 2 C 0.06 3.03 1.67 -11.54 -0.02 3.01 16 3 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 4 C -0.51 -27.66 7.30 25.60 0.19 -27.47 16 5 H 0.06 3.08 5.95 -2.91 -0.02 3.07 16 6 C 0.01 0.55 5.32 84.65 0.45 1.00 16 7 N -0.92 -54.49 11.67 21.45 0.25 -54.24 16 8 Si 0.94 44.26 29.54 68.60 2.03 46.28 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 C -0.05 -1.97 2.56 -11.12 -0.03 -2.00 16 13 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 14 C 0.12 4.16 7.08 86.62 0.61 4.77 16 15 N -0.74 -22.96 6.53 -337.78 -2.20 -25.17 16 16 C 0.17 6.16 7.03 38.34 0.27 6.43 16 17 C -0.19 -5.92 10.07 22.52 0.23 -5.70 16 18 C -0.08 -2.44 10.02 22.19 0.22 -2.22 16 19 C -0.19 -6.46 10.06 22.28 0.22 -6.24 16 20 C -0.07 -2.93 9.23 22.25 0.21 -2.72 16 21 C -0.16 -6.80 5.47 -19.63 -0.11 -6.91 16 22 H 0.04 1.55 6.44 -2.39 -0.02 1.54 16 23 H 0.04 2.33 6.45 -2.38 -0.02 2.31 16 24 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.06 2.16 6.32 -2.39 -0.02 2.14 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.42 9.96 8.96 -92.71 -0.83 9.13 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.11 4.72 6.03 -2.91 -0.02 4.71 16 Total: -1.00 -63.23 258.83 3.24 -59.99 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.29 Total: 16.55 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 2.87 Total: -43.43 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.95 Total: -79.40 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.23 3.24 -59.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.768 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds